updated readme file

added some output info for input argument in PagodaTester

4 files changed, 70 insertions, 31 deletions

diff --git a/.classpath b/.classpath
index 8a6a0f3..609d84c 100644
--- a/.classpath
+++ b/.classpath
@@ -1,28 +1,28 @@
-<?xml version="1.0" encoding="UTF-8"?>

-<classpath>

-        <classpathentry kind="src" output="target/classes" path="src">

-                <attributes>

-                        <attribute name="optional" value="true"/>

-                        <attribute name="maven.pomderived" value="true"/>

-                </attributes>

-        </classpathentry>

-        <classpathentry kind="src" path="example"/>

-        <classpathentry kind="src" output="target/test-classes" path="test">

-                <attributes>

-                        <attribute name="optional" value="true"/>

-                        <attribute name="maven.pomderived" value="true"/>

-                </attributes>

-        </classpathentry>

-        <classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">

-                <attributes>

-                        <attribute name="maven.pomderived" value="true"/>

-                </attributes>

-        </classpathentry>

-        <classpathentry kind="lib" path="lib/RDFox/Win/JRDFox.jar"/>

-        <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER">

-                <attributes>

-                        <attribute name="maven.pomderived" value="true"/>

-                </attributes>

-        </classpathentry>

-        <classpathentry kind="output" path="target/classes"/>

-</classpath>

+<?xml version="1.0" encoding="UTF-8"?>
+<classpath>
+        <classpathentry kind="src" output="target/classes" path="src">
+                <attributes>
+                        <attribute name="optional" value="true"/>
+                        <attribute name="maven.pomderived" value="true"/>
+                </attributes>
+        </classpathentry>
+        <classpathentry kind="src" path="example"/>
+        <classpathentry kind="src" output="target/test-classes" path="test">
+                <attributes>
+                        <attribute name="optional" value="true"/>
+                        <attribute name="maven.pomderived" value="true"/>
+                </attributes>
+        </classpathentry>
+        <classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
+                <attributes>
+                        <attribute name="maven.pomderived" value="true"/>
+                </attributes>
+        </classpathentry>
+        <classpathentry kind="lib" path="lib/RDFox/Linux/JRDFox.jar"/>
+        <classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
+                <attributes>
+                        <attribute name="maven.pomderived" value="true"/>
+                </attributes>
+        </classpathentry>
+        <classpathentry kind="output" path="target/classes"/>
+</classpath>
diff --git a/.gitignore b/.gitignore
index 510652a..0d42d8b 100644
--- a/.gitignore
+++ b/.gitignore
@@ -3,3 +3,4 @@
 /backup/
 /tmp/
 /testcase/
+/log4j.log
diff --git a/README.md b/README.md
index 422e4af..2a41926 100644
--- a/README.md
+++ b/README.md
@@ -1,2 +1,35 @@
-# PAGOdA
-a conjunctive query answering engine over OWL 2 ontologies
+PAGOdA
+=====
+
+PAGOdA is a conjunctive query answering engine for OWL 2 ontologies. The instruction how to use it can be found on the following website: http://www.cs.ox.ac.uk/isg/tools/PAGOdA/. 
+
+
+Project dependencies/requirements
+=====
+
+- JavaSE 8
+- Maven
+- Eclipse Luna
+
+
+How to compile the project from source in Eclipse?
+=====
+
+- In order to compile the project make sure that you have JavaSE 8 and Eclipse Luna installed on your computer.
+- After cloning the repository by command git clone https://github.com/yujiaoz/PAGOdA.git, you need to load the project into Eclipse and convert it into Maven project.
+- The project depends on a library JRDFox.jar that is not in central maven repository. The library for different operating systems can be found in lib directory. You need to include the correct one for your computer and add it to the build path. Alternative, if you have maven installed on your computer, you could add it into your local maven repository, modify maven dependencies and make sure that you remove it from the build path. If the provided JRDFox.jar doesn't work, you might need to follow the instruction below to compile the project JRDFox by yourself. 
+
+
+How to compile RDFox?
+===
+
+- Download https://github.com/yujiaoz/PAGOdA/blob/master/lib/RDFox/RDFox.zip.
+- Extract all files in the zip.
+- Go to the directory RDFox/RDFox.
+- Run command "ant". 
+- You will find JRDFox.jar in the diretory build/release/lib.
+
+
+How to run the project?
+===
+
diff --git a/test/uk/ac/ox/cs/pagoda/tester/PagodaTester.java b/test/uk/ac/ox/cs/pagoda/tester/PagodaTester.java
index 48a2a51..d50a18b 100644
--- a/test/uk/ac/ox/cs/pagoda/tester/PagodaTester.java
+++ b/test/uk/ac/ox/cs/pagoda/tester/PagodaTester.java
@@ -99,7 +99,7 @@ public class PagodaTester {
 //                      args = new String[] {dbpedia_tbox, dbpedia_abox, dbpedia_query};
 //                      args = new String[] {travel_tbox, null, dbpedia_query274};
 //                      args = new String[] {fly, null, fly_query};
-//                      args = new String[] {npd_tbox, npd_abox, npd_query};
+                        args = new String[] {npd_tbox, npd_abox, npd_query};
 //                      args = new String[] {npd_bench_tbox, npd_bench_abox, npd_bench_query};
 //                      args = new String[] {"../SemFacet/WebContent/WEB-INF/data/dbpedia.owl", "../SemFacet/WebContent/WEB-INF/data/dbpediaA.nt", null}; 
 //                      args = new String[] {"../core/WebContent/WEB-INF/data/fly.owl", "../core/WebContent/WEB-INF/data/fly-data.nt", null}; 
@@ -129,6 +129,11 @@ public class PagodaTester {
                 if (args.length > index) properties.setToClassify(Boolean.parseBoolean(args[index++].substring(1)));   
                 if (args.length > index) properties.setToCallHermiT(Boolean.parseBoolean(args[index++].substring(1)));   
         
+                System.out.println("Ontology file: " + properties.getOntologyPath()); 
+                System.out.println("Data files: " + properties.getDataPath());  
+                System.out.println("Query files: " + properties.getQueryPath()); 
+                System.out.println("Answer file: " + properties.getAnswerPath());
+                
                 QueryReasoner pagoda = null; 
                 
                 try {