diff options
| author | RncLsn <rnc.lsn@gmail.com> | 2015-07-03 12:33:55 +0100 |
|---|---|---|
| committer | RncLsn <rnc.lsn@gmail.com> | 2015-07-03 12:33:55 +0100 |
| commit | 133dab6e21f263df2baca913d3d0b7a4fd152d08 (patch) | |
| tree | 88b2783fcb84c0511bf5919ce5602e967b2bdd39 /data/reactome | |
| parent | afb949a595bf351d4c9f1a8984ed82edbd13b725 (diff) | |
| download | ACQuA-133dab6e21f263df2baca913d3d0b7a4fd152d08.tar.gz ACQuA-133dab6e21f263df2baca913d3d0b7a4fd152d08.zip | |
Reactome test: standard and sygenia queries.
Diffstat (limited to 'data/reactome')
| -rw-r--r-- | data/reactome/reactome_sygenia_queries.sparql | 649 |
1 files changed, 649 insertions, 0 deletions
diff --git a/data/reactome/reactome_sygenia_queries.sparql b/data/reactome/reactome_sygenia_queries.sparql new file mode 100644 index 0000000..97ba1c9 --- /dev/null +++ b/data/reactome/reactome_sygenia_queries.sparql | |||
| @@ -0,0 +1,649 @@ | |||
| 1 | ^[query1] | ||
| 2 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 3 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 4 | SELECT ?x | ||
| 5 | WHERE { | ||
| 6 | ?x rdf:type reactome:CellVocabulary | ||
| 7 | } | ||
| 8 | |||
| 9 | ^[query2] | ||
| 10 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 11 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 12 | SELECT ?x | ||
| 13 | WHERE { | ||
| 14 | ?x reactome:cofactor _:y | ||
| 15 | } | ||
| 16 | |||
| 17 | ^[query3] | ||
| 18 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 19 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 20 | SELECT ?x | ||
| 21 | WHERE { | ||
| 22 | ?x reactome:participant _:y . | ||
| 23 | _:y rdf:type reactome:PhysicalEntity | ||
| 24 | } | ||
| 25 | |||
| 26 | ^[query4] | ||
| 27 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 28 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 29 | SELECT ?x | ||
| 30 | WHERE { | ||
| 31 | ?x rdf:type reactome:SequenceRegionVocabulary | ||
| 32 | } | ||
| 33 | |||
| 34 | ^[query5] | ||
| 35 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 36 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 37 | SELECT ?x ?y | ||
| 38 | WHERE { | ||
| 39 | ?x reactome:bindsTo ?y | ||
| 40 | } | ||
| 41 | |||
| 42 | ^[query6] | ||
| 43 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 44 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 45 | SELECT ?x | ||
| 46 | WHERE { | ||
| 47 | ?x rdf:type reactome:EntityFeature | ||
| 48 | } | ||
| 49 | |||
| 50 | ^[query7] | ||
| 51 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 52 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 53 | SELECT ?x | ||
| 54 | WHERE { | ||
| 55 | ?x rdf:type reactome:Score | ||
| 56 | } | ||
| 57 | |||
| 58 | ^[query8] | ||
| 59 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 60 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 61 | SELECT ?x | ||
| 62 | WHERE { | ||
| 63 | ?x rdf:type reactome:ExperimentalForm | ||
| 64 | } | ||
| 65 | |||
| 66 | ^[query9] | ||
| 67 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 68 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 69 | SELECT ?x | ||
| 70 | WHERE { | ||
| 71 | ?x reactome:stepProcess _:y . | ||
| 72 | _:y rdf:type reactome:Conversion | ||
| 73 | } | ||
| 74 | |||
| 75 | ^[query10] | ||
| 76 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 77 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 78 | SELECT ?x | ||
| 79 | WHERE { | ||
| 80 | ?x reactome:stepProcess _:y . | ||
| 81 | _:y rdf:type reactome:Entity | ||
| 82 | } | ||
| 83 | |||
| 84 | ^[query11] | ||
| 85 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 86 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 87 | SELECT ?x | ||
| 88 | WHERE { | ||
| 89 | ?x rdf:type reactome:PathwayStep | ||
| 90 | } | ||
| 91 | |||
| 92 | ^[query12] | ||
| 93 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 94 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 95 | SELECT ?x | ||
| 96 | WHERE { | ||
| 97 | ?x rdf:type reactome:RelationshipTypeVocabulary | ||
| 98 | } | ||
| 99 | |||
| 100 | ^[query13] | ||
| 101 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 102 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 103 | SELECT ?x | ||
| 104 | WHERE { | ||
| 105 | ?x rdf:type reactome:TissueVocabulary | ||
| 106 | } | ||
| 107 | |||
| 108 | ^[query14] | ||
| 109 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 110 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 111 | SELECT ?x | ||
| 112 | WHERE { | ||
| 113 | _:y reactome:bindsTo ?x | ||
| 114 | } | ||
| 115 | |||
| 116 | ^[query15] | ||
| 117 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 118 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 119 | SELECT ?x | ||
| 120 | WHERE { | ||
| 121 | ?x reactome:stepConversion _:y | ||
| 122 | } | ||
| 123 | |||
| 124 | ^[query16] | ||
| 125 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 126 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 127 | SELECT ?x | ||
| 128 | WHERE { | ||
| 129 | ?x rdf:type reactome:Conversion | ||
| 130 | } | ||
| 131 | |||
| 132 | ^[query17] | ||
| 133 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 134 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 135 | SELECT ?x | ||
| 136 | WHERE { | ||
| 137 | ?x rdf:type reactome:Control | ||
| 138 | } | ||
| 139 | |||
| 140 | ^[query18] | ||
| 141 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 142 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 143 | SELECT ?x | ||
| 144 | WHERE { | ||
| 145 | ?x rdf:type reactome:Catalysis | ||
| 146 | } | ||
| 147 | |||
| 148 | ^[query19] | ||
| 149 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 150 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 151 | SELECT ?x | ||
| 152 | WHERE { | ||
| 153 | ?x reactome:stepConversion _:y . | ||
| 154 | _:y rdf:type reactome:Conversion | ||
| 155 | } | ||
| 156 | |||
| 157 | ^[query20] | ||
| 158 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 159 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 160 | SELECT ?x | ||
| 161 | WHERE { | ||
| 162 | ?x reactome:right _:y . | ||
| 163 | _:y rdf:type reactome:Entity | ||
| 164 | } | ||
| 165 | |||
| 166 | ^[query21] | ||
| 167 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 168 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 169 | SELECT ?x ?y | ||
| 170 | WHERE { | ||
| 171 | ?x reactome:participant ?y | ||
| 172 | } | ||
| 173 | |||
| 174 | ^[query22] | ||
| 175 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 176 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 177 | SELECT ?x | ||
| 178 | WHERE { | ||
| 179 | ?x reactome:left _:y | ||
| 180 | } | ||
| 181 | |||
| 182 | ^[query23] | ||
| 183 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 184 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 185 | SELECT ?x | ||
| 186 | WHERE { | ||
| 187 | ?x reactome:product _:y | ||
| 188 | } | ||
| 189 | |||
| 190 | ^[query24] | ||
| 191 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 192 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 193 | SELECT ?x | ||
| 194 | WHERE { | ||
| 195 | ?x rdf:type reactome:PhenotypeVocabulary | ||
| 196 | } | ||
| 197 | |||
| 198 | ^[query25] | ||
| 199 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 200 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 201 | SELECT ?x | ||
| 202 | WHERE { | ||
| 203 | ?x reactome:stepProcess _:y | ||
| 204 | } | ||
| 205 | |||
| 206 | ^[query26] | ||
| 207 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 208 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 209 | SELECT ?x | ||
| 210 | WHERE { | ||
| 211 | _:y reactome:bindsTo ?x . | ||
| 212 | _:y rdf:type reactome:EntityFeature | ||
| 213 | } | ||
| 214 | |||
| 215 | ^[query27] | ||
| 216 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 217 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 218 | SELECT ?x | ||
| 219 | WHERE { | ||
| 220 | ?x reactome:cofactor _:y . | ||
| 221 | _:y rdf:type reactome:PhysicalEntity | ||
| 222 | } | ||
| 223 | |||
| 224 | ^[query28] | ||
| 225 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 226 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 227 | SELECT ?x ?y | ||
| 228 | WHERE { | ||
| 229 | ?x reactome:stepProcess ?y | ||
| 230 | } | ||
| 231 | |||
| 232 | ^[query29] | ||
| 233 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 234 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 235 | SELECT ?x | ||
| 236 | WHERE { | ||
| 237 | ?x rdf:type reactome:Stoichiometry | ||
| 238 | } | ||
| 239 | |||
| 240 | ^[query30] | ||
| 241 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 242 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 243 | SELECT ?x | ||
| 244 | WHERE { | ||
| 245 | ?x rdf:type reactome:UtilityClass | ||
| 246 | } | ||
| 247 | |||
| 248 | ^[query31] | ||
| 249 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 250 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 251 | SELECT ?x | ||
| 252 | WHERE { | ||
| 253 | ?x rdf:type reactome:ChemicalStructure | ||
| 254 | } | ||
| 255 | |||
| 256 | ^[query32] | ||
| 257 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 258 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 259 | SELECT ?x | ||
| 260 | WHERE { | ||
| 261 | ?x rdf:type reactome:SequenceSite | ||
| 262 | } | ||
| 263 | |||
| 264 | ^[query33] | ||
| 265 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 266 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 267 | SELECT ?x | ||
| 268 | WHERE { | ||
| 269 | ?x rdf:type reactome:BioSource | ||
| 270 | } | ||
| 271 | |||
| 272 | ^[query34] | ||
| 273 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 274 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 275 | SELECT ?x | ||
| 276 | WHERE { | ||
| 277 | _:y reactome:bindsTo ?x . | ||
| 278 | _:y rdf:type reactome:UtilityClass | ||
| 279 | } | ||
| 280 | |||
| 281 | ^[query35] | ||
| 282 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 283 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 284 | SELECT ?x | ||
| 285 | WHERE { | ||
| 286 | ?x rdf:type reactome:ControlledVocabulary | ||
| 287 | } | ||
| 288 | |||
| 289 | ^[query36] | ||
| 290 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 291 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 292 | SELECT ?x | ||
| 293 | WHERE { | ||
| 294 | ?x rdf:type reactome:Transport | ||
| 295 | } | ||
| 296 | |||
| 297 | ^[query37] | ||
| 298 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 299 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 300 | SELECT ?x | ||
| 301 | WHERE { | ||
| 302 | ?x reactome:bindsTo _:y | ||
| 303 | } | ||
| 304 | |||
| 305 | ^[query38] | ||
| 306 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 307 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 308 | SELECT ?x | ||
| 309 | WHERE { | ||
| 310 | ?x reactome:template _:y | ||
| 311 | } | ||
| 312 | |||
| 313 | ^[query39] | ||
| 314 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 315 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 316 | SELECT ?x | ||
| 317 | WHERE { | ||
| 318 | ?x reactome:participant _:y | ||
| 319 | } | ||
| 320 | |||
| 321 | ^[query40] | ||
| 322 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 323 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 324 | SELECT ?x | ||
| 325 | WHERE { | ||
| 326 | ?x reactome:controlled _:y | ||
| 327 | } | ||
| 328 | |||
| 329 | ^[query41] | ||
| 330 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 331 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 332 | SELECT ?x | ||
| 333 | WHERE { | ||
| 334 | ?x rdf:type reactome:ModificationFeature | ||
| 335 | } | ||
| 336 | |||
| 337 | ^[query42] | ||
| 338 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 339 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 340 | SELECT ?x ?y | ||
| 341 | WHERE { | ||
| 342 | ?y reactome:bindsTo ?x | ||
| 343 | } | ||
| 344 | |||
| 345 | ^[query43] | ||
| 346 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 347 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 348 | SELECT ?x | ||
| 349 | WHERE { | ||
| 350 | ?x rdf:type reactome:InteractionVocabulary | ||
| 351 | } | ||
| 352 | |||
| 353 | ^[query44] | ||
| 354 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 355 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 356 | SELECT ?x | ||
| 357 | WHERE { | ||
| 358 | ?x rdf:type reactome:SequenceModificationVocabulary | ||
| 359 | } | ||
| 360 | |||
| 361 | ^[query45] | ||
| 362 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 363 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 364 | SELECT ?x | ||
| 365 | WHERE { | ||
| 366 | ?x reactome:right _:y . | ||
| 367 | _:y rdf:type reactome:PhysicalEntity | ||
| 368 | } | ||
| 369 | |||
| 370 | ^[query46] | ||
| 371 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 372 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 373 | SELECT ?x | ||
| 374 | WHERE { | ||
| 375 | ?x reactome:participant _:y . | ||
| 376 | _:y rdf:type reactome:Entity | ||
| 377 | } | ||
| 378 | |||
| 379 | ^[query47] | ||
| 380 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 381 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 382 | SELECT ?x | ||
| 383 | WHERE { | ||
| 384 | ?x rdf:type reactome:EvidenceCodeVocabulary | ||
| 385 | } | ||
| 386 | |||
| 387 | ^[query48] | ||
| 388 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 389 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 390 | SELECT ?x | ||
| 391 | WHERE { | ||
| 392 | ?x rdf:type reactome:Complex | ||
| 393 | } | ||
| 394 | |||
| 395 | ^[query49] | ||
| 396 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 397 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 398 | SELECT ?x | ||
| 399 | WHERE { | ||
| 400 | ?x rdf:type reactome:Provenance | ||
| 401 | } | ||
| 402 | |||
| 403 | ^[query50] | ||
| 404 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 405 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 406 | SELECT ?x | ||
| 407 | WHERE { | ||
| 408 | ?x rdf:type reactome:SequenceLocation | ||
| 409 | } | ||
| 410 | |||
| 411 | ^[query51] | ||
| 412 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 413 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 414 | SELECT ?x | ||
| 415 | WHERE { | ||
| 416 | ?x reactome:right _:y | ||
| 417 | } | ||
| 418 | |||
| 419 | ^[query52] | ||
| 420 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 421 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 422 | SELECT ?x | ||
| 423 | WHERE { | ||
| 424 | ?x rdf:type reactome:Evidence | ||
| 425 | } | ||
| 426 | |||
| 427 | ^[query53] | ||
| 428 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 429 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 430 | SELECT ?x | ||
| 431 | WHERE { | ||
| 432 | ?x rdf:type reactome:TemplateReaction | ||
| 433 | } | ||
| 434 | |||
| 435 | ^[query54] | ||
| 436 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 437 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 438 | SELECT ?x | ||
| 439 | WHERE { | ||
| 440 | ?x rdf:type reactome:Entity | ||
| 441 | } | ||
| 442 | |||
| 443 | ^[query55] | ||
| 444 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 445 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 446 | SELECT ?x | ||
| 447 | WHERE { | ||
| 448 | ?x reactome:bindsTo _:y . | ||
| 449 | _:y rdf:type reactome:BindingFeature | ||
| 450 | } | ||
| 451 | |||
| 452 | ^[query56] | ||
| 453 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 454 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 455 | SELECT ?x | ||
| 456 | WHERE { | ||
| 457 | ?x rdf:type reactome:Xref | ||
| 458 | } | ||
| 459 | |||
| 460 | ^[query57] | ||
| 461 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 462 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 463 | SELECT ?x | ||
| 464 | WHERE { | ||
| 465 | ?x rdf:type reactome:BiochemicalReaction | ||
| 466 | } | ||
| 467 | |||
| 468 | ^[query58] | ||
| 469 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 470 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 471 | SELECT ?x | ||
| 472 | WHERE { | ||
| 473 | ?x reactome:stepProcess _:y . | ||
| 474 | _:y rdf:type reactome:Interaction | ||
| 475 | } | ||
| 476 | |||
| 477 | ^[query59] | ||
| 478 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 479 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 480 | SELECT ?x | ||
| 481 | WHERE { | ||
| 482 | ?x rdf:type reactome:BindingFeature | ||
| 483 | } | ||
| 484 | |||
| 485 | ^[query60] | ||
| 486 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 487 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 488 | SELECT ?x | ||
| 489 | WHERE { | ||
| 490 | ?x rdf:type reactome:RelationshipXref | ||
| 491 | } | ||
| 492 | |||
| 493 | ^[query61] | ||
| 494 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 495 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 496 | SELECT ?x | ||
| 497 | WHERE { | ||
| 498 | ?x rdf:type reactome:PhysicalEntity | ||
| 499 | } | ||
| 500 | |||
| 501 | ^[query62] | ||
| 502 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 503 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 504 | SELECT ?x | ||
| 505 | WHERE { | ||
| 506 | ?x rdf:type reactome:CellularLocationVocabulary | ||
| 507 | } | ||
| 508 | |||
| 509 | ^[query63] | ||
| 510 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 511 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 512 | SELECT ?x | ||
| 513 | WHERE { | ||
| 514 | ?x rdf:type reactome:EntityReference | ||
| 515 | } | ||
| 516 | |||
| 517 | ^[query64] | ||
| 518 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 519 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 520 | SELECT ?x | ||
| 521 | WHERE { | ||
| 522 | ?x reactome:bindsTo _:y . | ||
| 523 | _:y rdf:type reactome:UtilityClass | ||
| 524 | } | ||
| 525 | |||
| 526 | ^[query65] | ||
| 527 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 528 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 529 | SELECT ?x | ||
| 530 | WHERE { | ||
| 531 | ?x reactome:left _:y . | ||
| 532 | _:y rdf:type reactome:Entity | ||
| 533 | } | ||
| 534 | |||
| 535 | ^[query66] | ||
| 536 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 537 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 538 | SELECT ?x | ||
| 539 | WHERE { | ||
| 540 | ?x rdf:type reactome:KPrime | ||
| 541 | } | ||
| 542 | |||
| 543 | ^[query67] | ||
| 544 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 545 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 546 | SELECT ?x | ||
| 547 | WHERE { | ||
| 548 | ?x rdf:type reactome:GeneticInteraction | ||
| 549 | } | ||
| 550 | |||
| 551 | ^[query68] | ||
| 552 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 553 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 554 | SELECT ?x | ||
| 555 | WHERE { | ||
| 556 | ?x reactome:bindsTo _:y . | ||
| 557 | _:y rdf:type reactome:EntityFeature | ||
| 558 | } | ||
| 559 | |||
| 560 | ^[query69] | ||
| 561 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 562 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 563 | SELECT ?x | ||
| 564 | WHERE { | ||
| 565 | ?x rdf:type reactome:Interaction | ||
| 566 | } | ||
| 567 | |||
| 568 | ^[query70] | ||
| 569 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 570 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 571 | SELECT ?x | ||
| 572 | WHERE { | ||
| 573 | ?x rdf:type reactome:ExperimentalFormVocabulary | ||
| 574 | } | ||
| 575 | |||
| 576 | ^[query71] | ||
| 577 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 578 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 579 | SELECT ?x | ||
| 580 | WHERE { | ||
| 581 | ?x reactome:left _:y . | ||
| 582 | _:y rdf:type reactome:PhysicalEntity | ||
| 583 | } | ||
| 584 | |||
| 585 | ^[query72] | ||
| 586 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 587 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 588 | SELECT ?x | ||
| 589 | WHERE { | ||
| 590 | ?x rdf:type reactome:SequenceInterval | ||
| 591 | } | ||
| 592 | |||
| 593 | ^[query73] | ||
| 594 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 595 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 596 | SELECT ?x | ||
| 597 | WHERE { | ||
| 598 | ?x rdf:type reactome:BiochemicalPathwayStep | ||
| 599 | } | ||
| 600 | |||
| 601 | ^[query74] | ||
| 602 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 603 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 604 | SELECT ?x | ||
| 605 | WHERE { | ||
| 606 | ?x rdf:type reactome:Pathway | ||
| 607 | } | ||
| 608 | |||
| 609 | ^[query75] | ||
| 610 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 611 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 612 | SELECT ?x | ||
| 613 | WHERE { | ||
| 614 | ?x reactome:controller _:y | ||
| 615 | } | ||
| 616 | |||
| 617 | ^[query76] | ||
| 618 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 619 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 620 | SELECT ?x | ||
| 621 | WHERE { | ||
| 622 | _:y reactome:bindsTo ?x . | ||
| 623 | _:y rdf:type reactome:BindingFeature | ||
| 624 | } | ||
| 625 | |||
| 626 | ^[query77] | ||
| 627 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 628 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 629 | SELECT ?x | ||
| 630 | WHERE { | ||
| 631 | ?x rdf:type reactome:SmallMoleculeReference | ||
| 632 | } | ||
| 633 | |||
| 634 | ^[query78] | ||
| 635 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 636 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 637 | SELECT ?x | ||
| 638 | WHERE { | ||
| 639 | ?x rdf:type reactome:DeltaG | ||
| 640 | } | ||
| 641 | |||
| 642 | ^[query79] | ||
| 643 | PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| 644 | PREFIX reactome: <http://www.biopax.org/release/biopax-level3.owl#> | ||
| 645 | SELECT ?x | ||
| 646 | WHERE { | ||
| 647 | ?x rdf:type reactome:EntityReferenceTypeVocabulary | ||
| 648 | } | ||
| 649 | |||
