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* Version 2.1.1v2.1.1RncLsn2015-09-111-1/+1
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* Improved the statistics that are generated for evaluating the system; ↵RncLsn2015-09-117-15/+55
| | | | configuration file: now default and user-specified.
* Small changesRncLsn2015-09-104-5/+19
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* Integrated fix (manually) from upper stream.RncLsn2015-09-034-6/+9
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* New test cases.RncLsn2015-09-035-3/+114
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* Incremental Skolemised store (seems completed).RncLsn2015-08-245-19/+93
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* Incremental Skolemised store (not working).RncLsn2015-08-1412-49/+244
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* Version number (2.1.1-SNAPSHOT)RncLsn2015-08-065-7/+19
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* Merge branch '2.1.0' into RulesRncLsn2015-08-061-1/+1
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| * Version number.v2.1.0RncLsn2015-08-061-1/+1
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* | Rules parsing.RncLsn2015-08-0416-59/+484
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* The LimitedSkolemisation now employs a fixed-depth term instead of a ↵RncLsn2015-08-038-27/+43
| | | | constant. Performed some testing before merging with master.
* CLI option names.RncLsn2015-08-031-1/+20
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* Option for SkolemUpperBound application and for skolemisation depth (from ↵RncLsn2015-08-018-209/+291
| | | | file pagoda.properties).
* Bug-fix for answer dependencies analysis: now it checks whether the ↵RncLsn2015-07-0910-35/+128
| | | | endomorphism makes the first tuple identical to the second one.
* Internalisation: added condition for existential variables (classes ↵RncLsn2015-07-086-31/+111
| | | | | | HermitChecker and QueryGraph). Answer dependencies: found bug, trying to solve; excluding dependency analysis solve the problem.
* Small changes.RncLsn2015-07-073-13/+22
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* Merge remote-tracking branch 'origin/While_finding_test_cases' into ↵RncLsn2015-07-060-0/+0
|\ | | | | | | | | | | | | While_finding_test_cases Conflicts: scripts/plottimes.py
| * Added script for plotting times.RncLsn2015-07-061-0/+29
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* | Added script for plotting times.RncLsn2015-07-061-0/+48
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* Many little changes.RncLsn2015-07-0324-95/+435
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* Reactome test: standard and sygenia queries.RncLsn2015-07-033-0/+932
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* Small changes.RncLsn2015-06-309-47/+41
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* Summarisation before Skolemisation. Added Reactome testcase.RncLsn2015-06-268-26/+71
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* Merge remote-tracking branch 'origin/Query-dependent-skolemisation' into ↵RncLsn2015-06-260-0/+0
|\ | | | | | | | | | | | | | | | | Query-dependent-skolemisation Conflicts: src/uk/ac/ox/cs/pagoda/query/rollup/QueryGraph.java src/uk/ac/ox/cs/pagoda/reasoner/MyQueryReasoner.java src/uk/ac/ox/cs/pagoda/reasoner/full/HermitChecker.java
| * Maybe fixed bug in internalisation.RncLsn2015-06-1615-54/+1890
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* | Maybe fixed bug in internalisation.RncLsn2015-06-2622-283/+2221
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* Small changes.RncLsn2015-06-104-92/+108
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* Fixed marking original individuals in the relevant upper store.RncLsn2015-06-0912-17/+132
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* Small changes.RncLsn2015-06-072-6/+14
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* Violations processor (Python script).RncLsn2015-06-053-2/+957
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* Violation statistics.RncLsn2015-06-0510-17/+103
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* Fixed terms' depth count in SkolemTermsManager (it was always zero).RncLsn2015-06-048-25/+44
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* Restored fixed SkolemTermsManager (went lost in some revert).RncLsn2015-06-045-58/+56
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* SyGENiA query converter.RncLsn2015-06-041-0/+91
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* removed ".idea"RncLsn2015-06-0464-832/+0
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* Merge remote-tracking branch 'origin/Query-dependent-skolemisation' into ↵RncLsn2015-06-040-0/+0
|\ | | | | | | Query-dependent-skolemisation
| * Removed useless directory ".idea".RncLsn2015-06-041-2/+0
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* | Removed useless directory ".idea".RncLsn2015-06-041-2/+0
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* New queries for LUBM and UOBM, automatically generated by SyGENiA.RncLsn2015-06-0410-5/+3189
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* Reintroduced extended queries. Successfully tested on LightTests and GapAnswers.RncLsn2015-06-037-121/+117
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* Before reintroducing extended queries.RncLsn2015-06-0323-396/+508
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* Working query-dependent semi-skolemised upper bound (tested on UOBM1 and LUBM1).RncLsn2015-06-0213-234/+256
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* Disposable.RncLsn2015-05-2934-3899/+5263
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* Anonymous ontology id.RncLsn2015-05-293-8/+11
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* Bug-fix in tester.RncLsn2015-05-2810-68/+76
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* Merge branch 'upstream' into Query-dependent-skolemisationRncLsn2015-05-287-391/+427
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: src/uk/ac/ox/cs/pagoda/approx/RLPlusOntology.java src/uk/ac/ox/cs/pagoda/endomorph/plan/OpenEndMultiThreadPlan.java src/uk/ac/ox/cs/pagoda/endomorph/plan/OpenEndPlan.java src/uk/ac/ox/cs/pagoda/query/GapByStore4ID.java src/uk/ac/ox/cs/pagoda/query/GapByStore4ID2.java src/uk/ac/ox/cs/pagoda/reasoner/MyQueryReasoner.java src/uk/ac/ox/cs/pagoda/reasoner/light/BasicQueryEngine.java src/uk/ac/ox/cs/pagoda/tracking/TrackingRuleEncoderWithGap.java src/uk/ac/ox/cs/pagoda/util/Utility.java test/uk/ac/ox/cs/pagoda/junit/ClauseTester.java test/uk/ac/ox/cs/pagoda/junit/TestGapMappedToLower.java
| * fixed a bug in the process of generating gap tuples, see test inyujiao2015-05-2514-51/+303
| | | | | | TestGapMappedToLower.java
| * turned on the LOG switch in Utilityyzhou2015-05-223-3/+32
| | | | | | | | added a tracking rule for inequality in TrackingRuleEncoderWithGap added a testcase in ClauseTester
* | Merged updates from upstream.RncLsn2015-05-2815-335/+554
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