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* The LimitedSkolemisation now employs a fixed-depth term instead of a ↵RncLsn2015-08-033-21/+36
| | | | constant. Performed some testing before merging with master.
* CLI option names.RncLsn2015-08-031-1/+20
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* Option for SkolemUpperBound application and for skolemisation depth (from ↵RncLsn2015-08-016-205/+283
| | | | file pagoda.properties).
* Bug-fix for answer dependencies analysis: now it checks whether the ↵RncLsn2015-07-095-23/+51
| | | | endomorphism makes the first tuple identical to the second one.
* Internalisation: added condition for existential variables (classes ↵RncLsn2015-07-084-26/+48
| | | | | | HermitChecker and QueryGraph). Answer dependencies: found bug, trying to solve; excluding dependency analysis solve the problem.
* Small changes.RncLsn2015-07-071-10/+19
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* Many little changes.RncLsn2015-07-0315-54/+298
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* Small changes.RncLsn2015-06-307-44/+29
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* Summarisation before Skolemisation. Added Reactome testcase.RncLsn2015-06-262-19/+36
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* Maybe fixed bug in internalisation.RncLsn2015-06-2612-250/+335
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* Small changes.RncLsn2015-06-101-1/+1
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* Fixed marking original individuals in the relevant upper store.RncLsn2015-06-097-5/+28
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* Small changes.RncLsn2015-06-071-2/+6
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* Violations processor (Python script).RncLsn2015-06-051-2/+2
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* Violation statistics.RncLsn2015-06-056-12/+94
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* Fixed terms' depth count in SkolemTermsManager (it was always zero).RncLsn2015-06-045-21/+26
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* Restored fixed SkolemTermsManager (went lost in some revert).RncLsn2015-06-044-54/+52
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* New queries for LUBM and UOBM, automatically generated by SyGENiA.RncLsn2015-06-041-1/+1
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* Reintroduced extended queries. Successfully tested on LightTests and GapAnswers.RncLsn2015-06-035-117/+111
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* Before reintroducing extended queries.RncLsn2015-06-0320-394/+504
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* Working query-dependent semi-skolemised upper bound (tested on UOBM1 and LUBM1).RncLsn2015-06-0210-232/+254
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* Disposable.RncLsn2015-05-2932-3897/+4103
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* Anonymous ontology id.RncLsn2015-05-291-4/+8
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* Bug-fix in tester.RncLsn2015-05-283-19/+15
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* Merge branch 'upstream' into Query-dependent-skolemisationRncLsn2015-05-286-339/+366
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: src/uk/ac/ox/cs/pagoda/approx/RLPlusOntology.java src/uk/ac/ox/cs/pagoda/endomorph/plan/OpenEndMultiThreadPlan.java src/uk/ac/ox/cs/pagoda/endomorph/plan/OpenEndPlan.java src/uk/ac/ox/cs/pagoda/query/GapByStore4ID.java src/uk/ac/ox/cs/pagoda/query/GapByStore4ID2.java src/uk/ac/ox/cs/pagoda/reasoner/MyQueryReasoner.java src/uk/ac/ox/cs/pagoda/reasoner/light/BasicQueryEngine.java src/uk/ac/ox/cs/pagoda/tracking/TrackingRuleEncoderWithGap.java src/uk/ac/ox/cs/pagoda/util/Utility.java test/uk/ac/ox/cs/pagoda/junit/ClauseTester.java test/uk/ac/ox/cs/pagoda/junit/TestGapMappedToLower.java
| * fixed a bug in the process of generating gap tuples, see test inyujiao2015-05-2513-51/+226
| | | | | | TestGapMappedToLower.java
| * turned on the LOG switch in Utilityyzhou2015-05-222-3/+7
| | | | | | | | added a tracking rule for inequality in TrackingRuleEncoderWithGap added a testcase in ClauseTester
* | Merged updates from upstream.RncLsn2015-05-2813-327/+453
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* | Rewritten ontology loading of class RLPlusOntology. Now query-dependent ↵RncLsn2015-05-281-44/+47
| | | | | | | | skolemisation works.
* | NOT-WORKING: trying to add query-dependent Skolemisation.RncLsn2015-05-2811-318/+310
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* | Removed extended queries (involving classes MyQueryReasoner and ↵RncLsn2015-05-213-76/+57
| | | | | | | | QueryRecord). Executed LightTests successfully.
* | Added more tests.RncLsn2015-05-2013-317/+407
| | | | | | | | Querying of the upper bound is currently unstable.
* | Deleted unused classes.RncLsn2015-05-1915-942/+196
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* | Changes in the upper store querying (mainly in MyQueryReasoner).RncLsn2015-05-198-376/+383
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* | Backup before changes in MyQueryReasoner.RncLsn2015-05-193-197/+217
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* | Configured Maven and improved executable class and tests.RncLsn2015-05-184-2/+168
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* | Testing and fixing. Executed successfully on UOBM{1,2,3,4,5,6,7,8}.RncLsn2015-05-1512-220/+183
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* | It executes. Matching bounds for query 18 of UOBM.RncLsn2015-05-146-40/+44
| | | | | | | | It is not stable: several critical fixes to do!
* | Fast implementation of all the other things to get something working, but it ↵RncLsn2015-05-139-61/+184
| | | | | | | | doesn't.
* | Implemented SkolemTermsManager.RncLsn2015-05-1314-143/+259
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* | Implementing Limited Skolemisation, in particular SkolemTermsDispenser.RncLsn2015-05-1329-579/+492
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* | Added classes for implementing new upper store (Limited Skolemisation).RncLsn2015-05-1212-493/+490
| | | | | | | | Started implementation of the new classes.
* | Adding (not completed) a new upper bound technique, namely Limited ↵RncLsn2015-05-1114-140/+160
| | | | | | | | Skolemisation.
* | Adding (not completed) log of partial answers in Json.RncLsn2015-05-096-78/+157
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* | Making the output machine-readable (JSON).RncLsn2015-05-074-125/+213
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* | Switch from JUnit to TestNG.RncLsn2015-05-061-1/+15
|/ | | | Plus minor fixes.
* removed debug output for ore compitition yzhou2015-05-025-15/+12
| | | | to add log info, check Utility.java LOGS
* fixed some bugsyzhou2015-05-013-8/+51
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* add time tag to the temporary outputyzhou2015-05-013-5/+16
| | | fixed a bug about equality in the tracking datalog encoding
* downgrade owl api and reorganised src filesyzhou2015-04-303-16/+4
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