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* Improved the statistics that are generated for evaluating the system; ↵RncLsn2015-09-111-2/+2
| | | | configuration file: now default and user-specified.
* Small changesRncLsn2015-09-104-5/+19
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* Integrated fix (manually) from upper stream.RncLsn2015-09-032-3/+4
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* New test cases.RncLsn2015-09-034-1/+112
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* Incremental Skolemised store (not working).RncLsn2015-08-141-2/+2
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* Version number (2.1.1-SNAPSHOT)RncLsn2015-08-064-6/+18
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* Rules parsing.RncLsn2015-08-042-0/+331
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* The LimitedSkolemisation now employs a fixed-depth term instead of a ↵RncLsn2015-08-034-5/+6
| | | | constant. Performed some testing before merging with master.
* Option for SkolemUpperBound application and for skolemisation depth (from ↵RncLsn2015-08-011-3/+4
| | | | file pagoda.properties).
* Bug-fix for answer dependencies analysis: now it checks whether the ↵RncLsn2015-07-095-12/+77
| | | | endomorphism makes the first tuple identical to the second one.
* Internalisation: added condition for existential variables (classes ↵RncLsn2015-07-082-5/+63
| | | | | | HermitChecker and QueryGraph). Answer dependencies: found bug, trying to solve; excluding dependency analysis solve the problem.
* Small changes.RncLsn2015-07-071-2/+2
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* Many little changes.RncLsn2015-07-038-41/+136
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* Reactome test: standard and sygenia queries.RncLsn2015-07-032-0/+283
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* Small changes.RncLsn2015-06-301-3/+3
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* Summarisation before Skolemisation. Added Reactome testcase.RncLsn2015-06-265-6/+34
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* Maybe fixed bug in internalisation.RncLsn2015-06-268-32/+160
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* Small changes.RncLsn2015-06-103-91/+107
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* Fixed marking original individuals in the relevant upper store.RncLsn2015-06-094-7/+99
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* Violation statistics.RncLsn2015-06-051-2/+2
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* Fixed terms' depth count in SkolemTermsManager (it was always zero).RncLsn2015-06-042-3/+3
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* Restored fixed SkolemTermsManager (went lost in some revert).RncLsn2015-06-041-4/+4
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* Removed useless directory ".idea".RncLsn2015-06-041-2/+0
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* New queries for LUBM and UOBM, automatically generated by SyGENiA.RncLsn2015-06-044-3/+123
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* Reintroduced extended queries. Successfully tested on LightTests and GapAnswers.RncLsn2015-06-031-3/+3
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* Before reintroducing extended queries.RncLsn2015-06-032-1/+2
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* Working query-dependent semi-skolemised upper bound (tested on UOBM1 and LUBM1).RncLsn2015-06-021-1/+1
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* Disposable.RncLsn2015-05-291-2/+2
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* Anonymous ontology id.RncLsn2015-05-292-4/+3
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* Bug-fix in tester.RncLsn2015-05-287-49/+61
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* Merge branch 'upstream' into Query-dependent-skolemisationRncLsn2015-05-281-52/+61
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | Conflicts: src/uk/ac/ox/cs/pagoda/approx/RLPlusOntology.java src/uk/ac/ox/cs/pagoda/endomorph/plan/OpenEndMultiThreadPlan.java src/uk/ac/ox/cs/pagoda/endomorph/plan/OpenEndPlan.java src/uk/ac/ox/cs/pagoda/query/GapByStore4ID.java src/uk/ac/ox/cs/pagoda/query/GapByStore4ID2.java src/uk/ac/ox/cs/pagoda/reasoner/MyQueryReasoner.java src/uk/ac/ox/cs/pagoda/reasoner/light/BasicQueryEngine.java src/uk/ac/ox/cs/pagoda/tracking/TrackingRuleEncoderWithGap.java src/uk/ac/ox/cs/pagoda/util/Utility.java test/uk/ac/ox/cs/pagoda/junit/ClauseTester.java test/uk/ac/ox/cs/pagoda/junit/TestGapMappedToLower.java
| * fixed a bug in the process of generating gap tuples, see test inyujiao2015-05-251-0/+77
| | | | | | TestGapMappedToLower.java
| * turned on the LOG switch in Utilityyzhou2015-05-221-0/+25
| | | | | | | | added a tracking rule for inequality in TrackingRuleEncoderWithGap added a testcase in ClauseTester
* | Merged updates from upstream.RncLsn2015-05-282-8/+101
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* | NOT-WORKING: trying to add query-dependent Skolemisation.RncLsn2015-05-281-2/+2
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* | Removed extended queries (involving classes MyQueryReasoner and ↵RncLsn2015-05-211-2/+2
| | | | | | | | QueryRecord). Executed LightTests successfully.
* | Added more tests.RncLsn2015-05-2015-71/+201255
| | | | | | | | Querying of the upper bound is currently unstable.
* | Deleted unused classes.RncLsn2015-05-192-10/+26
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* | Changes in the upper store querying (mainly in MyQueryReasoner).RncLsn2015-05-194-5/+6
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* | Backup before changes in MyQueryReasoner.RncLsn2015-05-1913-164/+460
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* | Configured Maven and improved executable class and tests.RncLsn2015-05-1823-1096/+224
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* | Testing and fixing. Executed successfully on UOBM{1,2,3,4,5,6,7,8}.RncLsn2015-05-1518-53/+77
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* | Adding (not completed) log of partial answers in Json.RncLsn2015-05-096-21/+25
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* | Making the output machine-readable (JSON).RncLsn2015-05-0715-286/+339
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* | Switch from JUnit to TestNG.RncLsn2015-05-0620-285/+334
|/ | | | Plus minor fixes.
* removed debug output for ore compitition yzhou2015-05-021-1/+2
| | | | to add log info, check Utility.java LOGS
* add time tag to the temporary outputyzhou2015-05-011-2/+1
| | | fixed a bug about equality in the tracking datalog encoding
* downgrade owl api and reorganised src filesyzhou2015-04-3023-2706/+4
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* added top answers optimisation backyzhou2015-04-291-2/+2
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* handle inconsistent ontologyyzhou2015-04-291-0/+6
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