From 133dab6e21f263df2baca913d3d0b7a4fd152d08 Mon Sep 17 00:00:00 2001 From: RncLsn Date: Fri, 3 Jul 2015 12:33:55 +0100 Subject: Reactome test: standard and sygenia queries. --- data/reactome/reactome_sygenia_queries.sparql | 649 ++++++++++++++++++++++++++ 1 file changed, 649 insertions(+) create mode 100644 data/reactome/reactome_sygenia_queries.sparql (limited to 'data/reactome/reactome_sygenia_queries.sparql') diff --git a/data/reactome/reactome_sygenia_queries.sparql b/data/reactome/reactome_sygenia_queries.sparql new file mode 100644 index 0000000..97ba1c9 --- /dev/null +++ b/data/reactome/reactome_sygenia_queries.sparql @@ -0,0 +1,649 @@ +^[query1] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:CellVocabulary +} + +^[query2] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:cofactor _:y +} + +^[query3] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:participant _:y . + _:y rdf:type reactome:PhysicalEntity +} + +^[query4] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:SequenceRegionVocabulary +} + +^[query5] +PREFIX rdf: +PREFIX reactome: +SELECT ?x ?y +WHERE { + ?x reactome:bindsTo ?y +} + +^[query6] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:EntityFeature +} + +^[query7] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:Score +} + +^[query8] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:ExperimentalForm +} + +^[query9] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:stepProcess _:y . + _:y rdf:type reactome:Conversion +} + +^[query10] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:stepProcess _:y . + _:y rdf:type reactome:Entity +} + +^[query11] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:PathwayStep +} + +^[query12] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:RelationshipTypeVocabulary +} + +^[query13] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:TissueVocabulary +} + +^[query14] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + _:y reactome:bindsTo ?x +} + +^[query15] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:stepConversion _:y +} + +^[query16] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:Conversion +} + +^[query17] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:Control +} + +^[query18] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:Catalysis +} + +^[query19] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:stepConversion _:y . + _:y rdf:type reactome:Conversion +} + +^[query20] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:right _:y . + _:y rdf:type reactome:Entity +} + +^[query21] +PREFIX rdf: +PREFIX reactome: +SELECT ?x ?y +WHERE { + ?x reactome:participant ?y +} + +^[query22] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:left _:y +} + +^[query23] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:product _:y +} + +^[query24] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:PhenotypeVocabulary +} + +^[query25] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:stepProcess _:y +} + +^[query26] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + _:y reactome:bindsTo ?x . + _:y rdf:type reactome:EntityFeature +} + +^[query27] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:cofactor _:y . + _:y rdf:type reactome:PhysicalEntity +} + +^[query28] +PREFIX rdf: +PREFIX reactome: +SELECT ?x ?y +WHERE { + ?x reactome:stepProcess ?y +} + +^[query29] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:Stoichiometry +} + +^[query30] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:UtilityClass +} + +^[query31] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:ChemicalStructure +} + +^[query32] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:SequenceSite +} + +^[query33] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:BioSource +} + +^[query34] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + _:y reactome:bindsTo ?x . + _:y rdf:type reactome:UtilityClass +} + +^[query35] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:ControlledVocabulary +} + +^[query36] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:Transport +} + +^[query37] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:bindsTo _:y +} + +^[query38] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:template _:y +} + +^[query39] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:participant _:y +} + +^[query40] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:controlled _:y +} + +^[query41] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:ModificationFeature +} + +^[query42] +PREFIX rdf: +PREFIX reactome: +SELECT ?x ?y +WHERE { + ?y reactome:bindsTo ?x +} + +^[query43] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:InteractionVocabulary +} + +^[query44] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:SequenceModificationVocabulary +} + +^[query45] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:right _:y . + _:y rdf:type reactome:PhysicalEntity +} + +^[query46] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:participant _:y . + _:y rdf:type reactome:Entity +} + +^[query47] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:EvidenceCodeVocabulary +} + +^[query48] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:Complex +} + +^[query49] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:Provenance +} + +^[query50] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:SequenceLocation +} + +^[query51] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:right _:y +} + +^[query52] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:Evidence +} + +^[query53] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:TemplateReaction +} + +^[query54] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:Entity +} + +^[query55] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:bindsTo _:y . + _:y rdf:type reactome:BindingFeature +} + +^[query56] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:Xref +} + +^[query57] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:BiochemicalReaction +} + +^[query58] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:stepProcess _:y . + _:y rdf:type reactome:Interaction +} + +^[query59] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:BindingFeature +} + +^[query60] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:RelationshipXref +} + +^[query61] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:PhysicalEntity +} + +^[query62] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:CellularLocationVocabulary +} + +^[query63] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:EntityReference +} + +^[query64] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:bindsTo _:y . + _:y rdf:type reactome:UtilityClass +} + +^[query65] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:left _:y . + _:y rdf:type reactome:Entity +} + +^[query66] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:KPrime +} + +^[query67] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:GeneticInteraction +} + +^[query68] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:bindsTo _:y . + _:y rdf:type reactome:EntityFeature +} + +^[query69] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:Interaction +} + +^[query70] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:ExperimentalFormVocabulary +} + +^[query71] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:left _:y . + _:y rdf:type reactome:PhysicalEntity +} + +^[query72] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:SequenceInterval +} + +^[query73] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:BiochemicalPathwayStep +} + +^[query74] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:Pathway +} + +^[query75] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x reactome:controller _:y +} + +^[query76] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + _:y reactome:bindsTo ?x . + _:y rdf:type reactome:BindingFeature +} + +^[query77] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:SmallMoleculeReference +} + +^[query78] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:DeltaG +} + +^[query79] +PREFIX rdf: +PREFIX reactome: +SELECT ?x +WHERE { + ?x rdf:type reactome:EntityReferenceTypeVocabulary +} + -- cgit v1.2.3