From 17bd9beaf7f358a44e5bf36a5855fe6727d506dc Mon Sep 17 00:00:00 2001
From: Federico Igne <federico.igne@cs.ox.ac.uk>
Date: Tue, 10 May 2022 18:17:06 +0100
Subject: [pagoda] Move project to Scala

This commit includes a few changes:
- The repository still uses Maven to manage dependency but it is now a
  Scala project.
- The code has been ported from OWLAPI 3.4.10 to 5.1.20
- A proof of concept program using both RSAComb and PAGOdA has been
  added.
---
 .../semanticweb/simpleETL/RDFHandlerWriter.java    | 45 -------------
 src/org/semanticweb/simpleETL/SimpleETL.java       | 76 ----------------------
 2 files changed, 121 deletions(-)
 delete mode 100644 src/org/semanticweb/simpleETL/RDFHandlerWriter.java
 delete mode 100644 src/org/semanticweb/simpleETL/SimpleETL.java

(limited to 'src/org/semanticweb/simpleETL')

diff --git a/src/org/semanticweb/simpleETL/RDFHandlerWriter.java b/src/org/semanticweb/simpleETL/RDFHandlerWriter.java
deleted file mode 100644
index e5e2e2a..0000000
--- a/src/org/semanticweb/simpleETL/RDFHandlerWriter.java
+++ /dev/null
@@ -1,45 +0,0 @@
-package org.semanticweb.simpleETL;
-import org.openrdf.model.Statement;
-import org.openrdf.rio.RDFHandler;
-import org.openrdf.rio.RDFHandlerException;
-import org.openrdf.rio.RDFWriter;
-
-
-public class RDFHandlerWriter implements RDFHandler {
-	protected RDFWriter m_writer;
-	protected boolean m_started;
-	
-	public RDFHandlerWriter(RDFWriter writer){
-		m_writer = writer;
-		m_started = false;
-	}
-
-	@Override
-	public void endRDF() throws RDFHandlerException {
-		// Do not end
-	}
-
-	@Override
-	public void handleComment(String arg0) throws RDFHandlerException {
-		m_writer.handleComment(arg0);
-		
-	}
-
-	@Override
-	public void handleNamespace(String arg0, String arg1) throws RDFHandlerException {
-		m_writer.handleNamespace(arg0, arg1);		
-	}
-
-	@Override
-	public void handleStatement(Statement arg0) throws RDFHandlerException {
-		m_writer.handleStatement(arg0);		
-	}
-
-	@Override
-	public void startRDF() throws RDFHandlerException {
-		if(!m_started) {
-			m_started = true;
-			m_writer.startRDF();
-		}		
-	}	
-}
diff --git a/src/org/semanticweb/simpleETL/SimpleETL.java b/src/org/semanticweb/simpleETL/SimpleETL.java
deleted file mode 100644
index cc91e1f..0000000
--- a/src/org/semanticweb/simpleETL/SimpleETL.java
+++ /dev/null
@@ -1,76 +0,0 @@
-package org.semanticweb.simpleETL;
-
-import org.openrdf.rio.RDFParser;
-import org.openrdf.rio.RDFWriter;
-import org.openrdf.rio.rdfxml.RDFXMLParser;
-import org.openrdf.rio.turtle.TurtleWriter;
-import uk.ac.ox.cs.pagoda.util.Utility;
-
-import java.io.File;
-import java.io.FileInputStream;
-import java.io.FileOutputStream;
-import java.util.regex.Pattern;
-
-public class SimpleETL {
-	
-	protected final static String m_prefix_LUBM = "http://www.lehigh.edu/~zhp2/2004/0401/univ-bench.owl#";
-	protected final static String m_prefix_UOBM = "http://semantics.crl.ibm.com/univ-bench-dl.owl#";
-	protected final static String m_prefix_FLY= "http://www.virtualflybrain.org/ontologies/individual_neurons/FC_neuron_GF_an.owl#";
-
-	String m_prefix; 
-	String m_fileToImport;
-	String m_fileToExport; 
-	
-	public SimpleETL(String prefix, String fileToImport) {
-		m_prefix = prefix; 
-		m_fileToImport = fileToImport; 
-		m_fileToExport = m_fileToImport.replace(".owl", ".ttl"); 
-	}
-	
-	public SimpleETL(String prefix, String fileToImport, String outPath) {
-		m_prefix = prefix; 
-		m_fileToImport = fileToImport;
-		File file = new File(outPath); 
-		if (file.exists() && file.isDirectory())
-			m_fileToExport = outPath + Utility.FILE_SEPARATOR + "data.ttl"; 
-		else 
-			m_fileToExport = outPath; 
-//				+ Utility.FILE_SEPARATOR + m_fileToImport.substring(m_fileToImport.lastIndexOf(Utility.FILE_SEPARATOR), m_fileToImport.lastIndexOf(".")) + ".ttl"; 
-	}
-	
-	public void rewrite() throws Exception {
-//		RDFParser parser = new TurtleParser();
-		RDFParser parser = new RDFXMLParser(); 
-		
-		FileOutputStream fos = new FileOutputStream(m_fileToExport); 
-		try {
-			RDFWriter writer = new TurtleWriter(fos);
-		
-//			String m_fileToExport = m_fileToImport.replace(".owl", ".ntriple"); 
-//			RDFWriter writer = new NTriplesWriter(new FileOutputStream(m_fileToExport));
-		
-			RDFHandlerWriter multiHandler = new RDFHandlerWriter(writer);
-			parser.setRDFHandler(multiHandler);
-			File fileToImport = new File(m_fileToImport);
-			if(fileToImport.isDirectory()) {
-				for(File file : fileToImport.listFiles()) {
-					if(file.isFile() && (Pattern.matches(".*.owl", file.getName()) || Pattern.matches(".*.rdf", file.getName()))) {
-						Utility.logDebug("Parsing " + file.getName());
-						parser.parse(new FileInputStream(file), m_prefix);
-					}
-				}
-			}
-			else
-				parser.parse(new FileInputStream(fileToImport), m_prefix);
-			writer.endRDF();
-		}
-		finally {
-			fos.close();
-		}
-		Utility.logDebug("SimpleETL rewriting DONE: additional ontology data is saved in " + m_fileToExport + ".");
-	}
-	
-	public String getExportedFile() {
-		return m_fileToExport; 
-	}
-}
-- 
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