From 17bd9beaf7f358a44e5bf36a5855fe6727d506dc Mon Sep 17 00:00:00 2001 From: Federico Igne Date: Tue, 10 May 2022 18:17:06 +0100 Subject: [pagoda] Move project to Scala This commit includes a few changes: - The repository still uses Maven to manage dependency but it is now a Scala project. - The code has been ported from OWLAPI 3.4.10 to 5.1.20 - A proof of concept program using both RSAComb and PAGOdA has been added. --- test/uk/ac/ox/cs/hermit/JAIR_HermiT.java | 129 ------------------------------- 1 file changed, 129 deletions(-) delete mode 100644 test/uk/ac/ox/cs/hermit/JAIR_HermiT.java (limited to 'test/uk/ac/ox/cs/hermit/JAIR_HermiT.java') diff --git a/test/uk/ac/ox/cs/hermit/JAIR_HermiT.java b/test/uk/ac/ox/cs/hermit/JAIR_HermiT.java deleted file mode 100644 index 72e7af8..0000000 --- a/test/uk/ac/ox/cs/hermit/JAIR_HermiT.java +++ /dev/null @@ -1,129 +0,0 @@ -package uk.ac.ox.cs.hermit; - -import org.junit.Test; -import uk.ac.ox.cs.pagoda.util.TestUtil; - -public class JAIR_HermiT { - - @Test - public void lubm1() throws Exception { - String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); - String[] args = new String[] { - TestUtil.combinePaths(ontoDir, "lubm/univ-bench.owl"), - TestUtil.combinePaths(ontoDir, "lubm/data/lubm1_owl"), - TestUtil.combinePaths(ontoDir, "lubm/queries/answersCorrectness.sparql") -// , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/lubm1/hermit" - }; - HermitQueryReasoner.main(args); - } - - @Test - public void lubm1_rolledUp() throws Exception { - String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); - String[] args = new String[] { - "/home/yzhou/backup/20141212/univ-bench-queries.owl", - TestUtil.combinePaths(ontoDir, "lubm/data/lubm1_owl"), - TestUtil.combinePaths(ontoDir, "lubm/queries/atomic_lubm.sparql") -// , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/lubm1/hermit_rolledUp" - }; - HermitQueryReasoner.main(args); - } - - @Test - public void uobm1() throws Exception { - String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); - String[] args = new String[] { - TestUtil.combinePaths(ontoDir, "uobm/univ-bench-dl.owl"), - TestUtil.combinePaths(ontoDir, "uobm/data/uobm1_owl_withDeclaration"), - TestUtil.combinePaths(ontoDir, "uobm/queries/standard.sparql") -// , "hermit_uobm1.out" -// , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/uobm1/hermit" - }; - HermitQueryReasoner.main(args); - } - - @Test - public void uobm1_rolledUp() throws Exception { - String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); - String[] args = new String[] { - "/home/yzhou/backup/20141212/univ-bench-dl-queries.owl", - TestUtil.combinePaths(ontoDir, "uobm/data/uobm1_owl_withDeclaration"), - TestUtil.combinePaths(ontoDir, "uobm/queries/atomic_uobm.sparql") - , "hermit_uobm1_rolledUp.out" -// , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/uobm1/hermit_rolledUp" - }; - HermitQueryReasoner.main(args); - } - - @Test - public void fly_rolledUp() throws Exception { - String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); - HermitQueryReasoner.main( - TestUtil.combinePaths(ontoDir, "fly/fly-all-in-one_rolledUp.owl"), -// TestUtil.combinePaths(ontoDir, "fly/fly_anatomy_XP_with_GJ_FC_individuals.owl", - null, - TestUtil.combinePaths(ontoDir, "fly/queries/fly_atomic.sparql") - , "hermit_fly.out" - ); - } - - @Test - public void npd() throws Exception { - String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); - HermitQueryReasoner.main( - TestUtil.combinePaths(ontoDir, "npd/npd-all-minus-datatype.owl"), - TestUtil.combinePaths(ontoDir, "npd/data/npd-data-dump-minus-datatype-new.ttl"), - TestUtil.combinePaths(ontoDir, "npd/queries/atomic_ground.sparql") - , "hermit_npd.out" -// , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/npd/hermit" - ); - } - - @Test - public void dbpedia() throws Exception { - String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); - HermitQueryReasoner.main( - TestUtil.combinePaths(ontoDir, "dbpedia/integratedOntology-all-in-one-minus-datatype.owl"), - TestUtil.combinePaths(ontoDir, "dbpedia/data/dbpedia-minus-datatype-new.ttl"), - TestUtil.combinePaths(ontoDir, "dbpedia/queries/atomic_ground.sparql") - , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/dbpedia/hermit" - ); - } - - @Test - public void reactome() throws Exception { - String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); - HermitQueryReasoner.main( - TestUtil.combinePaths(ontoDir, "bio2rdf/reactome/biopax-level3-processed.owl"), - TestUtil.combinePaths(ontoDir, "bio2rdf/reactome/graph sampling/reactome_sample_10.ttl"), - TestUtil.combinePaths(ontoDir, "bio2rdf/reactome/queries/atomic_ground.sparql") - , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/reactome/hermit_10p" - ); - } - - @Test - public void chembl() throws Exception { - String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); - HermitQueryReasoner.main( - TestUtil.combinePaths(ontoDir, "bio2rdf/chembl/cco-noDPR.ttl"), -// null, - TestUtil.combinePaths(ontoDir, "bio2rdf/chembl/graph sampling/sample_1.nt"), - TestUtil.combinePaths(ontoDir, "bio2rdf/chembl/queries/atomic_ground.sparql") - , "hermit_chembl.out" -// , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/chembl/hermit_1p" - ); - } - - @Test - public void uniprot() throws Exception { - String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); - HermitQueryReasoner.main( - TestUtil.combinePaths(ontoDir, "bio2rdf/uniprot/core-sat.owl"), - TestUtil.combinePaths(ontoDir, "bio2rdf/uniprot/graph sampling/sample_1.nt"), - TestUtil.combinePaths(ontoDir, "bio2rdf/uniprot/queries/atomic_ground.sparql") - , "hermit_uniprot.out" -// , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/uniprot/hermit_1p" - ); - } - -} -- cgit v1.2.3