From 9ce65c5a963b03ee97fe9cb6c5aa65a3c04a80a8 Mon Sep 17 00:00:00 2001
From: yzhou <yujiao.zhou@gmail.com>
Date: Tue, 21 Apr 2015 10:34:27 +0100
Subject: initial version

---
 test/uk/ac/ox/cs/hermit/JAIR_HermiT.java | 120 +++++++++++++++++++++++++++++++
 1 file changed, 120 insertions(+)
 create mode 100644 test/uk/ac/ox/cs/hermit/JAIR_HermiT.java

(limited to 'test/uk/ac/ox/cs/hermit/JAIR_HermiT.java')

diff --git a/test/uk/ac/ox/cs/hermit/JAIR_HermiT.java b/test/uk/ac/ox/cs/hermit/JAIR_HermiT.java
new file mode 100644
index 0000000..2fc478d
--- /dev/null
+++ b/test/uk/ac/ox/cs/hermit/JAIR_HermiT.java
@@ -0,0 +1,120 @@
+package uk.ac.ox.cs.hermit;
+
+import org.junit.Test;
+
+import uk.ac.ox.cs.pagoda.tester.PagodaTester;
+
+public class JAIR_HermiT {
+
+	@Test
+	public void lubm1() throws Exception {
+		String[] args = new String[] {
+				PagodaTester.onto_dir + "lubm/univ-bench.owl",
+				PagodaTester.onto_dir + "lubm/data/lubm1_owl",
+				PagodaTester.onto_dir + "lubm/queries/test.sparql"
+//				, "/home/yzhou/java-workspace/test-share/results_new/lubm1/hermit"
+		};
+		HermitQueryReasoner.main(args);
+	}
+	
+	@Test
+	public void lubm1_rolledUp() throws Exception {
+		String[] args = new String[] {
+				"/home/yzhou/backup/20141212/univ-bench-queries.owl",
+				PagodaTester.onto_dir + "lubm/data/lubm1_owl",
+				PagodaTester.onto_dir + "lubm/queries/atomic_lubm.sparql" 
+//				, "/home/yzhou/java-workspace/test-share/results_new/lubm1/hermit_rolledUp"
+		};
+		HermitQueryReasoner.main(args);
+	}
+	
+	@Test
+	public void uobm1() throws Exception {
+		String[] args = new String[] {
+				PagodaTester.onto_dir + "uobm/univ-bench-dl.owl",
+				PagodaTester.onto_dir + "uobm/data/uobm1_owl_withDeclaration",
+				PagodaTester.onto_dir + "uobm/queries/standard.sparql" 
+//				, "hermit_uobm1.out"
+//				, "/home/yzhou/java-workspace/test-share/results_new/uobm1/hermit"
+		};
+		HermitQueryReasoner.main(args);
+	}
+	
+	@Test
+	public void uobm1_rolledUp() throws Exception {
+		String[] args = new String[] {
+				"/home/yzhou/backup/20141212/univ-bench-dl-queries.owl",
+				PagodaTester.onto_dir + "uobm/data/uobm1_owl_withDeclaration",
+				PagodaTester.onto_dir + "uobm/queries/atomic_uobm.sparql" 
+				, "hermit_uobm1_rolledUp.out"
+//				, "/home/yzhou/java-workspace/test-share/results_new/uobm1/hermit_rolledUp"
+		};
+		HermitQueryReasoner.main(args);
+	}
+	
+	@Test
+	public void fly_rolledUp() throws Exception {
+		HermitQueryReasoner.main(
+				PagodaTester.onto_dir + "fly/fly-all-in-one_rolledUp.owl",
+//				PagodaTester.onto_dir + "fly/fly_anatomy_XP_with_GJ_FC_individuals.owl",
+				null, 
+				PagodaTester.onto_dir + "fly/queries/fly_atomic.sparql" 
+				, "hermit_fly.out"
+		);
+	}
+	
+	@Test 
+	public void npd() throws Exception {
+		HermitQueryReasoner.main(
+				PagodaTester.onto_dir + "npd/npd-all-minus-datatype.owl", 
+				PagodaTester.onto_dir + "npd/data/npd-data-dump-minus-datatype-new.ttl", 
+				PagodaTester.onto_dir + "npd/queries/atomic_ground.sparql" 
+				, "hermit_npd.out"
+//				, "/home/yzhou/java-workspace/test-share/results_new/npd/hermit"
+		); 
+	}
+
+	@Test 
+	public void dbpedia() throws Exception {
+		HermitQueryReasoner.main(
+				PagodaTester.onto_dir + "dbpedia/integratedOntology-all-in-one-minus-datatype.owl", 
+				PagodaTester.onto_dir + "dbpedia/data/dbpedia-minus-datatype-new.ttl",
+				PagodaTester.onto_dir + "dbpedia/queries/atomic_ground.sparql"
+				, "/home/yzhou/java-workspace/test-share/results_new/dbpedia/hermit"
+		);
+	}
+
+	@Test 
+	public void reactome() throws Exception {
+		HermitQueryReasoner.main(
+				PagodaTester.onto_dir + "bio2rdf/reactome/biopax-level3-processed.owl", 
+				PagodaTester.onto_dir + "bio2rdf/reactome/graph sampling/reactome_sample_10.ttl", 
+				PagodaTester.onto_dir + "bio2rdf/reactome/queries/atomic_ground.sparql"
+				, "/home/yzhou/java-workspace/test-share/results_new/reactome/hermit_10p"
+		); 
+	}
+
+	@Test 
+	public void chembl() throws Exception {
+		HermitQueryReasoner.main(
+				PagodaTester.onto_dir + "bio2rdf/chembl/cco-noDPR.ttl", 
+//				null,
+				PagodaTester.onto_dir + "bio2rdf/chembl/graph sampling/sample_1.nt", 
+				PagodaTester.onto_dir + "bio2rdf/chembl/queries/atomic_ground.sparql"
+				, "hermit_chembl.out"
+//				, "/home/yzhou/java-workspace/test-share/results_new/chembl/hermit_1p"
+		); 
+	}
+
+	@Test 
+	public void uniprot() throws Exception {
+		HermitQueryReasoner.main(
+				PagodaTester.onto_dir + "bio2rdf/uniprot/core-sat.owl", 
+				PagodaTester.onto_dir + "bio2rdf/uniprot/graph sampling/sample_1.nt", 
+				PagodaTester.onto_dir + "bio2rdf/uniprot/queries/atomic_ground.sparql"
+				, "hermit_uniprot.out"
+//				, "/home/yzhou/java-workspace/test-share/results_new/uniprot/hermit_1p"
+		); 
+	}
+
+}
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