From 17bd9beaf7f358a44e5bf36a5855fe6727d506dc Mon Sep 17 00:00:00 2001 From: Federico Igne Date: Tue, 10 May 2022 18:17:06 +0100 Subject: [pagoda] Move project to Scala This commit includes a few changes: - The repository still uses Maven to manage dependency but it is now a Scala project. - The code has been ported from OWLAPI 3.4.10 to 5.1.20 - A proof of concept program using both RSAComb and PAGOdA has been added. --- .../cs/pagoda/global_tests/TestPagodaReactome.java | 53 ---------------------- 1 file changed, 53 deletions(-) delete mode 100644 test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaReactome.java (limited to 'test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaReactome.java') diff --git a/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaReactome.java b/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaReactome.java deleted file mode 100644 index 8a8a596..0000000 --- a/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaReactome.java +++ /dev/null @@ -1,53 +0,0 @@ -package uk.ac.ox.cs.pagoda.global_tests; - -import org.testng.annotations.Test; -import uk.ac.ox.cs.pagoda.Pagoda; -import uk.ac.ox.cs.pagoda.util.TestUtil; - -import java.io.IOException; -import java.nio.file.Paths; - -public class TestPagodaReactome { - - @Test(groups = {"justExecute"}) - public void justExecute() throws IOException { - String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); - - Pagoda.builder() - .ontology(Paths.get(ontoDir, "reactome/biopax-level3-processed.owl")) - .data(Paths.get(ontoDir, "reactome/data/sample_10.ttl")) - .query(Paths.get(ontoDir, "reactome/test.sparql")) - .classify(true) - .hermit(true) - .build() - .run(); - } - - @Test(groups = {"sygenia"}) - public void justExecute_sygenia() throws IOException { - String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); - - Pagoda.builder() - .ontology(Paths.get(ontoDir, "reactome/biopax-level3-processed.owl")) - .data(Paths.get(ontoDir, "reactome/data/sample_10.ttl")) - .query(Paths.get(ontoDir, "reactome/reactome_sygenia_queries.sparql")) - .classify(true) - .hermit(true) - .build() - .run(); - } - - @Test(groups = {"existential"}) - public void justExecute_existential() throws IOException { - String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); - - Pagoda.builder() - .ontology(Paths.get(ontoDir, "reactome/biopax-level3-processed.owl")) - .data(Paths.get(ontoDir, "reactome/data/sample_10.ttl")) - .query(Paths.get(ontoDir, "reactome/existential_queries.sparql")) -// .query(Paths.get(ontoDir, "reactome/Queries_by_Feier-et-al.sparql")) - .build() - .run(); - } - -} -- cgit v1.2.3