From 9ce65c5a963b03ee97fe9cb6c5aa65a3c04a80a8 Mon Sep 17 00:00:00 2001 From: yzhou Date: Tue, 21 Apr 2015 10:34:27 +0100 Subject: initial version --- test/uk/ac/ox/cs/pagoda/junit/JAIR_PAGOdA.java | 173 +++++++++++++++++++++++++ 1 file changed, 173 insertions(+) create mode 100644 test/uk/ac/ox/cs/pagoda/junit/JAIR_PAGOdA.java (limited to 'test/uk/ac/ox/cs/pagoda/junit/JAIR_PAGOdA.java') diff --git a/test/uk/ac/ox/cs/pagoda/junit/JAIR_PAGOdA.java b/test/uk/ac/ox/cs/pagoda/junit/JAIR_PAGOdA.java new file mode 100644 index 0000000..2a148cc --- /dev/null +++ b/test/uk/ac/ox/cs/pagoda/junit/JAIR_PAGOdA.java @@ -0,0 +1,173 @@ +package uk.ac.ox.cs.pagoda.junit; + +import org.junit.Test; + +import uk.ac.ox.cs.pagoda.tester.PagodaTester; + +public class JAIR_PAGOdA { + + public void lubm1() { + String[] args = new String[] { + PagodaTester.onto_dir + "lubm/univ-bench.owl", + PagodaTester.onto_dir + "lubm/data/lubm1.ttl", + PagodaTester.onto_dir + "lubm/queries/test.sparql" + }; + PagodaTester.main(args); + AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/lubm1/pagoda"); + } + + + public void lubm1_conj() { + String[] args = new String[] { + PagodaTester.onto_dir + "lubm/univ-bench.owl", + PagodaTester.onto_dir + "lubm/data/lubm1.ttl", + PagodaTester.onto_dir + "lubm/queries/test_pellet.sparql" + }; + PagodaTester.main(args); + AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/lubm1/pagoda_conj"); + } + + + public void lubm1_rolledUp() { + String[] args = new String[] { + "/home/yzhou/backup/20141212/univ-bench-queries.owl", + PagodaTester.onto_dir + "lubm/data/lubm1.ttl", + PagodaTester.onto_dir + "lubm/queries/atomic_lubm.sparql" + }; + PagodaTester.main(args); + AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/lubm1/pagoda_rolledUp"); + } + + + public void uobm1() { + String[] args = new String[] { + PagodaTester.onto_dir + "uobm/univ-bench-dl.owl", + PagodaTester.onto_dir + "uobm/data/uobm1.ttl", + PagodaTester.onto_dir + "uobm/queries/standard.sparql" + }; + PagodaTester.main(args); + AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uobm1/pagoda"); + } + + + public void uobm1_conj() { + String[] args = new String[] { + PagodaTester.onto_dir + "uobm/univ-bench-dl.owl", + PagodaTester.onto_dir + "uobm/data/uobm1.ttl", + PagodaTester.onto_dir + "uobm/queries/standard_pellet.sparql" + }; + PagodaTester.main(args); + AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uobm1/pagoda_conj"); + } + + + public void uobm1_rolledUp() { + String[] args = new String[] { + "/home/yzhou/backup/20141212/univ-bench-dl-queries.owl", + PagodaTester.onto_dir + "uobm/data/uobm1.ttl", + PagodaTester.onto_dir + "uobm/queries/atomic_uobm.sparql" + }; + PagodaTester.main(args); +// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uobm1/pagoda_rolledUp"); + } + + + public void fly() { + String[] args = new String[] { + PagodaTester.onto_dir + "fly/fly_anatomy_XP_with_GJ_FC_individuals.owl", + null, + PagodaTester.onto_dir + "fly/queries/fly_pellet.sparql" + }; + PagodaTester.main(args); +// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/fly/pagoda"); + } + + @Test + public void fly_conj() { + String[] args = new String[] { + PagodaTester.onto_dir + "fly/fly_anatomy_XP_with_GJ_FC_individuals.owl", + null, + PagodaTester.onto_dir + "fly/queries/fly_pellet.sparql" + }; + PagodaTester.main(args); + AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/fly/pagoda_conj"); + } + + + public void fly_rolledUp() { + PagodaTester.main(new String[] { +// PagodaTester.onto_dir + "fly/fly_anatomy_XP_with_GJ_FC_individuals.owl", + PagodaTester.onto_dir + "fly/fly-all-in-one_rolledUp.owl", + null, + PagodaTester.onto_dir + "fly/queries/fly_atomic.sparql" + }); +// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/fly/pagoda_rolledUp"); + } + + public void dbpedia() { + PagodaTester.main( + PagodaTester.onto_dir + "dbpedia/integratedOntology-all-in-one-minus-datatype.owl", + PagodaTester.onto_dir + "dbpedia/data/dbpedia-minus-datatype-new.ttl", + PagodaTester.onto_dir + "dbpedia/queries/atomic_ground.sparql" + , "dbpedia.ans" + ); + +// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/dbpedia/pagoda"); + } + + public void npd() { + PagodaTester.main( + PagodaTester.onto_dir + "npd/npd-all-minus-datatype.owl", + PagodaTester.onto_dir + "npd/data/npd-data-dump-minus-datatype-new.ttl", + PagodaTester.onto_dir + "npd/queries/atomic_ground.sparql" + , "npd.ans" + ); + +// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/npd/pagoda"); + } + + public void reactome() { + PagodaTester.main( + PagodaTester.onto_dir + "bio2rdf/reactome/biopax-level3-processed.owl", + PagodaTester.onto_dir + "bio2rdf/reactome/graph sampling/reactome_sample_10.ttl", +// null, +// PagodaTester.onto_dir + "bio2rdf/reactome/queries/atomic_ground.sparql" + PagodaTester.onto_dir + "bio2rdf/reactome/queries/example.sparql" + , "pagoda_reactome.ans" + ); + AllTests.copy("log4j.log", "output/jair/pagoda_reactome.example"); + +// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/reactome/pagoda_10p"); + } + + public void chembl() { + PagodaTester.main( + PagodaTester.onto_dir + "bio2rdf/chembl/cco-noDPR.ttl", + PagodaTester.onto_dir + "bio2rdf/chembl/graph sampling/sample_1.nt", +// PagodaTester.onto_dir + "bio2rdf/chembl/queries/atomic_ground.sparql" + PagodaTester.onto_dir + "bio2rdf/chembl/queries/example.sparql" + , "pagoda_chembl.ans" + ); + AllTests.copy("log4j.log", "output/jair/pagoda_chembl.example"); +// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/chembl/pagoda_1p"); + } + + public void uniprot() { + PagodaTester.main( + PagodaTester.onto_dir + "bio2rdf/uniprot/core-sat-processed.owl", + PagodaTester.onto_dir + "bio2rdf/uniprot/graph sampling/sample_1.nt", +// null, +// PagodaTester.onto_dir + "bio2rdf/uniprot/queries/atomic_ground.sparql" + PagodaTester.onto_dir + "bio2rdf/uniprot/queries/example.sparql" + , "pagoda_uniprot.ans" + ); + AllTests.copy("log4j.log", "output/jair/pagoda_uniprot.example"); +// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uniprot/pagoda_1p"); + } + + + public static void main(String... args) { + new JAIR_PAGOdA().fly(); + } + +} -- cgit v1.2.3