From 9ce65c5a963b03ee97fe9cb6c5aa65a3c04a80a8 Mon Sep 17 00:00:00 2001
From: yzhou <yujiao.zhou@gmail.com>
Date: Tue, 21 Apr 2015 10:34:27 +0100
Subject: initial version

---
 .../uk/ac/ox/cs/pagoda/junit/JAIR_Scalability.java | 85 ++++++++++++++++++++++
 1 file changed, 85 insertions(+)
 create mode 100644 test/uk/ac/ox/cs/pagoda/junit/JAIR_Scalability.java

(limited to 'test/uk/ac/ox/cs/pagoda/junit/JAIR_Scalability.java')

diff --git a/test/uk/ac/ox/cs/pagoda/junit/JAIR_Scalability.java b/test/uk/ac/ox/cs/pagoda/junit/JAIR_Scalability.java
new file mode 100644
index 0000000..5bd3134
--- /dev/null
+++ b/test/uk/ac/ox/cs/pagoda/junit/JAIR_Scalability.java
@@ -0,0 +1,85 @@
+package uk.ac.ox.cs.pagoda.junit;
+
+import org.junit.Test;
+
+import uk.ac.ox.cs.pagoda.tester.PagodaTester;
+
+public class JAIR_Scalability {
+	
+	private static final String date = "_0123"; 
+
+	@Test
+	public void reactome() {
+		testReactome(10, false);
+	}
+	
+	@Test
+	public void chembl() {
+		testChEMBL(1, false);
+	}
+
+	@Test
+	public void uniprot() {
+		testUniProt(1, false);
+	}
+
+	public void testReactome(int percentage, boolean save) {
+		String[] args = new String[] {
+				PagodaTester.onto_dir + "bio2rdf/reactome/biopax-level3-processed.owl", 
+				PagodaTester.onto_dir + "bio2rdf/reactome/graph sampling/simplifed_sample_" + percentage + ".ttl", 
+				PagodaTester.onto_dir + "bio2rdf/reactome/queries/test.sparql"
+				, "reactome.ans"
+		}; 
+		if (percentage == 10)
+			args[1] = args[1].replace("simplifed", "reactome");
+		
+		PagodaTester.main(args); 
+		if (save)
+			AllTests.copy("log4j.log", "/home/yzhou/java-workspace/test-share/results_new/reactome/pagoda_" + percentage + "p" + date); 
+	}
+	
+	public void testChEMBL(int percentage, boolean save) {
+		String[] args = new String[] {
+				PagodaTester.onto_dir + "bio2rdf/chembl/cco-noDPR.ttl", 
+				PagodaTester.onto_dir + "bio2rdf/chembl/sample_" + percentage + ".nt",
+//				PagodaTester.onto_dir + "bio2rdf/chembl/queries/atomic_ground.sparql"
+				PagodaTester.onto_dir + "bio2rdf/chembl/queries/test.sparql"
+				, "chembl.ans"
+		}; 
+		if (percentage == 1 || percentage == 10 || percentage == 50)
+			args[1] = args[1].replace("chembl", "chembl/graph sampling");
+		else 
+			if (percentage == 100)
+				args[1] = "/home/yzhou/RDFData/ChEMBL/facts/ChEMBL.ttl"; 
+		
+		PagodaTester.main(args);
+		if (save)
+		AllTests.copy("log4j.log", "/home/yzhou/java-workspace/test-share/results_new/chembl/pagoda_" + percentage + "p" + date); 
+	}
+	
+	public void testUniProt(int percentage, boolean save) {
+		String[] args = new String[] {
+				PagodaTester.onto_dir + "bio2rdf/uniprot/core-sat-processed.owl", 
+				PagodaTester.onto_dir + "bio2rdf/uniprot/sample_" + percentage + ".nt",
+//				PagodaTester.onto_dir + "bio2rdf/uniprot/queries/atomic_ground.sparql"
+				PagodaTester.onto_dir + "bio2rdf/uniprot/queries/test.sparql"
+				, "uniprot.ans"
+		}; 
+		
+		if (percentage == 1 || percentage == 10 || percentage == 50)
+			args[1] = args[1].replace("uniprot", "uniprot/graph sampling");
+		else 
+			if (percentage == 100)
+				args[1] = "/home/yzhou/krr-nas-share/Yujiao/ontologies/bio2rdf/uniprot/data/uniprot_cleaned.nt"; 
+		
+		PagodaTester.main(args); 
+		if (save)
+			AllTests.copy("log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uniprot/pagoda_" + percentage + "p" + date); 
+	}
+	
+	public static void main(String... args) {
+		PagodaTester.ShellMode = true; 
+		new JAIR_Scalability().testUniProt(50, false);
+	}
+
+}
-- 
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