5 files changed, 21 insertions, 21 deletions

diff --git a/src/main/scala/uk/ac/ox/cs/rsacomb/Main.scala b/src/main/scala/uk/ac/ox/cs/rsacomb/Main.scala
index d41ca8c..c7ace0f 100644
--- a/src/main/scala/uk/ac/ox/cs/rsacomb/Main.scala
+++ b/src/main/scala/uk/ac/ox/cs/rsacomb/Main.scala
@@ -61,7 +61,7 @@ object RSAComb extends App {
     source.close()
 
     /* Compute answers to query */
-    val answers = ConjunctiveQuery(query).map(ontology ask _)
+    val answers = ConjunctiveQuery.parse(query).map(ontology ask _)
     answers map (_.toString) foreach println
   }
 }
diff --git a/src/main/scala/uk/ac/ox/cs/rsacomb/RSAOntology.scala b/src/main/scala/uk/ac/ox/cs/rsacomb/RSAOntology.scala
index 52d4905..7b4b142 100644
--- a/src/main/scala/uk/ac/ox/cs/rsacomb/RSAOntology.scala
+++ b/src/main/scala/uk/ac/ox/cs/rsacomb/RSAOntology.scala
@@ -336,7 +336,7 @@ class RSAOntology(val ontology: OWLOntology) {
         RSA.Prefixes
       )
       .map(
-        new ConjunctiveQueryAnswers(query.bcq, _)
+        new ConjunctiveQueryAnswers(query.bcq, query.variables, _)
       )
       .get
     RDFoxUtil.closeConnection(server, data)
diff --git a/src/main/scala/uk/ac/ox/cs/rsacomb/sparql/ConjunctiveQuery.scala b/src/main/scala/uk/ac/ox/cs/rsacomb/sparql/ConjunctiveQuery.scala
index 451d1f4..1fb75d7 100644
--- a/src/main/scala/uk/ac/ox/cs/rsacomb/sparql/ConjunctiveQuery.scala
+++ b/src/main/scala/uk/ac/ox/cs/rsacomb/sparql/ConjunctiveQuery.scala
@@ -31,7 +31,7 @@ object ConjunctiveQuery {
     * @return an [[scala.Option]] containing a ConjunctiveQuery if the
     *         input query represents one, None is returned otherwise.
     */
-  def apply(
+  def parse(
       query: String,
       prefixes: Prefixes = new Prefixes()
   ): Option[ConjunctiveQuery] =
diff --git a/src/test/scala/uk/ac/ox/cs/rsacomb/FilteringProgramSpecs.scala b/src/test/scala/uk/ac/ox/cs/rsacomb/FilteringProgramSpecs.scala
index 86e0253..93e312c 100644
--- a/src/test/scala/uk/ac/ox/cs/rsacomb/FilteringProgramSpecs.scala
+++ b/src/test/scala/uk/ac/ox/cs/rsacomb/FilteringProgramSpecs.scala
@@ -66,28 +66,28 @@ class FilteringProgramSpec extends AnyFlatSpec with Matchers {
   import FilteringProgramSpec._
 
   "CQ 0" should "generate 27 rules and 3 facts" in {
-    val cq = ConjunctiveQuery(cq0).get
+    val cq = ConjunctiveQuery.parse(cq0).get
     val filter = FilteringProgram(cq, constants)
     filter.facts should have length 3
     filter.rules should have length 27
   }
 
   "CQ 1" should "generate 15 rules" in {
-    val cq = ConjunctiveQuery(cq1).get
+    val cq = ConjunctiveQuery.parse(cq1).get
     val filter = FilteringProgram(cq, List())
     filter.facts shouldBe empty
     filter.rules should have length 15
   }
 
   "CQ 2" should "generate 51 rules" in {
-    val cq = ConjunctiveQuery(cq2).get
+    val cq = ConjunctiveQuery.parse(cq2).get
     val filter = FilteringProgram(cq, List())
     filter.facts shouldBe empty
     filter.rules should have length 51
   }
 
   "BCQ 0" should "generate 46 rules" in {
-    val cq = ConjunctiveQuery(bcq0).get
+    val cq = ConjunctiveQuery.parse(bcq0).get
     val filter = FilteringProgram(cq, constants)
     filter.facts should have length 3
     filter.rules should have length 43
diff --git a/src/test/scala/uk/ac/ox/cs/rsacomb/sparql/ConjunctiveQuerySpec.scala b/src/test/scala/uk/ac/ox/cs/rsacomb/sparql/ConjunctiveQuerySpec.scala
index 07e7bfb..7938174 100644
--- a/src/test/scala/uk/ac/ox/cs/rsacomb/sparql/ConjunctiveQuerySpec.scala
+++ b/src/test/scala/uk/ac/ox/cs/rsacomb/sparql/ConjunctiveQuerySpec.scala
@@ -142,35 +142,35 @@ class ConjunctiveQuerySpec
   import ConjunctiveQuerySpec._
 
   "A conjunctive query" should "result in a `ConjunctiveQuery` instance" in {
-    ConjunctiveQuery(cq0) shouldBe defined
+    ConjunctiveQuery.parse(cq0) shouldBe defined
   }
 
   "A boolean conjunctive query" should "result in a `ConjunctiveQuery` instance" in {
-    ConjunctiveQuery(bcq0) shouldBe defined
+    ConjunctiveQuery.parse(bcq0) shouldBe defined
   }
 
   "A query with proper SELECT defined" should "not be a BCQ" in {
-    ConjunctiveQuery(cq0).value should not be 'bcq
+    ConjunctiveQuery.parse(cq0).value should not be 'bcq
   }
 
   "A query with a \"*\" SELECT" should "not be a BCQ" in {
-    ConjunctiveQuery(cq1).value should not be 'bcq
+    ConjunctiveQuery.parse(cq1).value should not be 'bcq
   }
 
   "An ASK query" should "not be a BCQ" in {
-    ConjunctiveQuery(bcq0).value shouldBe 'bcq
+    ConjunctiveQuery.parse(bcq0).value shouldBe 'bcq
   }
 
   "Queries" should "have distinct answer and bounded variables" in {
     for (q <- queries) {
-      val cq = ConjunctiveQuery(q)
+      val cq = ConjunctiveQuery.parse(q)
       forAll(cq.value.answer) { v => cq.value.bounded should not contain v }
       forAll(cq.value.bounded) { v => cq.value.answer should not contain v }
     }
   }
 
   "CQ0" should "have {?obj, ?pred} as bounded variables" in {
-    ConjunctiveQuery(cq0).value.bounded should contain theSameElementsAs
+    ConjunctiveQuery.parse(cq0).value.bounded should contain theSameElementsAs
       List(
         Variable.create("Y"),
         Variable.create("Z")
@@ -178,15 +178,15 @@ class ConjunctiveQuerySpec
   }
 
   "CQ1" should "have no bounded variable" in {
-    ConjunctiveQuery(cq1).value.bounded shouldBe empty
+    ConjunctiveQuery.parse(cq1).value.bounded shouldBe empty
   }
 
   "CQ2" should "have no bounded variable" in {
-    ConjunctiveQuery(cq2).value.bounded shouldBe empty
+    ConjunctiveQuery.parse(cq2).value.bounded shouldBe empty
   }
 
   "CQ3" should "have {?w, ?fp} as bounded variables" in {
-    ConjunctiveQuery(cq3).value.bounded should contain theSameElementsAs
+    ConjunctiveQuery.parse(cq3).value.bounded should contain theSameElementsAs
       List(
         Variable.create("w"),
         Variable.create("fp")
@@ -194,11 +194,11 @@ class ConjunctiveQuerySpec
   }
 
   "CQ4" should "have no bounded variable" in {
-    ConjunctiveQuery(cq4).value.bounded shouldBe empty
+    ConjunctiveQuery.parse(cq4).value.bounded shouldBe empty
   }
 
   "CQ5" should "have a non-empty bounded set" in {
-    ConjunctiveQuery(cq5).value.bounded should contain theSameElementsAs
+    ConjunctiveQuery.parse(cq5).value.bounded should contain theSameElementsAs
       List(
         Variable.create("w"),
         Variable.create("c_int"),
@@ -208,7 +208,7 @@ class ConjunctiveQuerySpec
   }
 
   "CQ6" should "have a non-empty bounded set" in {
-    ConjunctiveQuery(cq6).value.bounded should contain theSameElementsAs
+    ConjunctiveQuery.parse(cq6).value.bounded should contain theSameElementsAs
       List(
         Variable.create("w"),
         Variable.create("int")
@@ -216,7 +216,7 @@ class ConjunctiveQuerySpec
   }
 
   "CQ7" should "have a non-empty bounded set" in {
-    ConjunctiveQuery(cq7).value.bounded should contain theSameElementsAs
+    ConjunctiveQuery.parse(cq7).value.bounded should contain theSameElementsAs
       List(
         Variable.create("w"),
         Variable.create("z"),