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* Avoid generating a JSON string before writing to fileFederico Igne2021-11-034-19/+41
| | | | This solve a crash when considering a huge amount of queries.
* Drop filtering tuple table when done with a queryFederico Igne2021-11-012-84/+11
| | | | | This avoids running out of memory on RDFox side when executing a use amount of queries.
* Update sbt assembly plugin to 1.1.0Federico Igne2021-10-311-1/+1
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* Perform fewer tests to avoid running out of memory in GH ActionsFederico Igne2021-10-311-6/+6
| | | | This is a temporary solution until we find a better way.
* Finalise dbpedia functional testingFederico Igne2021-10-3012-12/+6086
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* Fix verbose printing of canonical model factsFederico Igne2021-10-221-1/+1
| | | | Printing a fact does not add a dot at the end on the line.
* Setup tests for both master and developFederico Igne2021-10-213-16/+36
| | | | | | | | | | We are avoiding slow tests for now since they seem to run out of RAM. Also note that in the GitHub Actions we used a trick to expose the `$HOME` env variable, as described here: https://web.archive.org/web/20211021130639/https://brandur.org/fragments/github-actions-env-vars-in-env-vars A nice badge in the README will also tell the outcome of the process.
* Serialise and silence output in testsFederico Igne2021-10-214-3/+13
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* Rework RDFox simulation to be more modularFederico Igne2021-10-206-40/+93
| | | | This will help with faster testing and debugging.
* Add script to load debug data to RDFoxFederico Igne2021-10-055-80/+116
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* Add substitution rules in equality axiomatisationFederico Igne2021-10-041-2/+29
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* Merge branch 'upperbound' into developFederico Igne2021-10-0438-1346/+142271
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| * Fix issue where not all roles where considered for top axiomatisationFederico Igne2021-10-046-41/+56
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| * Add LUBM test dataFederico Igne2021-10-046-1/+140158
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| * Tag some tests as slowFederico Igne2021-10-042-3/+37
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| * Make file logging lazyFederico Igne2021-10-042-2/+2
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| * Add file output on verbose log levelFederico Igne2021-10-032-6/+15
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| * Rework CLI configsFederico Igne2021-10-032-124/+164
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| * Fix functional testsFederico Igne2021-10-031-1/+1
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| * Fix prefix in dependency graphFederico Igne2021-10-031-1/+1
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| * Introduce functional testsFederico Igne2021-10-032-3/+54
| | | | | | | | | | These tests will check correctness of the overall system across versions. We should add more tests for know ontologies.
| * Assign queries integer identifierFederico Igne2021-10-032-12/+14
| | | | | | | | | | | | | | | | | | | | | | The ID needs to be specified at creation time or in a query file preceeding the query with the syntax ``` ^[Query<id>] ``` where `<id>` is the id of the query.
| * Temporary comment unit testFederico Igne2021-10-034-207/+207
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| * Move to os-lib for filesystem operationsFederico Igne2021-10-036-39/+55
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| * Fix compilation errorsFederico Igne2021-10-034-23/+27
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| * Allow querying of a single queryFederico Igne2021-10-021-18/+36
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| * Expose logger level to CLIFederico Igne2021-10-022-5/+24
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| * Rework revides filtering program computation to use named graphsFederico Igne2021-10-027-262/+254
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| * Rework naive filtering program computation to use named graphsFederico Igne2021-10-017-166/+298
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| * Make canonical model generation parametric over named graphFederico Igne2021-10-016-83/+141
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| * Refactor query answering to use named graphsFederico Igne2021-09-305-82/+148
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| * Write answers to output fileFederico Igne2021-09-292-3/+16
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| * Always use internal equality instead of SAME_ASFederico Igne2021-09-291-2/+2
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| * Add import of multiple queriesFederico Igne2021-09-293-40/+70
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| * Add JSON format for CQ answersFederico Igne2021-09-294-5/+25
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| * Update RDFox library to 5.2.1Federico Igne2021-09-013-9/+12
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| * Bump version to v0.2.0Federico Igne2021-08-061-1/+1
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| * Add new fresh data factoryFederico Igne2021-08-0614-376/+455
| | | | | | | | This will help write more significant test.
| * Extend converter to RDFox rules to handle property chain axiomsFederico Igne2021-08-032-66/+36
| | | | | | | | | | | | | | | | | | The converter to RDFox datalog rules shouldn't worry about which axiom is supported or not (it should be a job of the approximation algorithm or of a previous step). Now the converter tries its best to convert anything that makes sense in datalog. Also upperbound is ready for testing.
| * Update normalizer to handle additional OWL axiomsFederico Igne2021-08-021-111/+97
| | | | | | | | | | | | Also the normalizer should not distinguish ALCHOIQ axioms from non-ALCHOIQ axioms, and should try its best to return a normalised axiom.
| * Implement fine-grained constant skolemization in upperboundFederico Igne2021-07-291-100/+128
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| * Change spelling: LowerBound to LowerboundFederico Igne2021-07-292-11/+11
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| * Add skeleton for upperbound computationFederico Igne2021-07-271-0/+183
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* | Add CITATION.cff fileFederico Igne2021-08-251-0/+17
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* Merge branch 'approximation'v0.2.0Federico Igne2021-07-279-415/+886
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| * Rework class structure to match more general workflowFederico Igne2021-07-273-13/+15
| | | | | | | | | | | | | | | | The major change is the introduction of a new class Ontology (superclass of RSAOntology) that contains all those operation that we would like to perform on *any* OWL 2 ontology. Approximation is also generic on the return type, allowing for example intermediate steps (or chaining of approximations).
| * Fix file namingFederico Igne2021-07-223-2/+2
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| * Remove normalization step from lowerbound computationFederico Igne2021-07-222-18/+15
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| * Review main workflowFederico Igne2021-07-224-17/+61
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| * Make approximation generic over returned typeFederico Igne2021-07-223-38/+33
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