initial version

1 files changed, 295 insertions, 0 deletions

diff --git a/src/uk/ac/ox/cs/pagoda/endomorph/DependencyGraph.java b/src/uk/ac/ox/cs/pagoda/endomorph/DependencyGraph.java
new file mode 100644
index 0000000..307fa33
--- /dev/null
+++ b/src/uk/ac/ox/cs/pagoda/endomorph/DependencyGraph.java
@@ -0,0 +1,295 @@
+ package uk.ac.ox.cs.pagoda.endomorph;
+
+import java.util.Arrays;
+import java.util.Collection;
+import java.util.Comparator;
+import java.util.HashMap;
+import java.util.HashSet;
+import java.util.Iterator;
+import java.util.LinkedList;
+import java.util.Map;
+import java.util.Queue;
+import java.util.Set;
+
+import uk.ac.ox.cs.pagoda.summary.Edge;
+import uk.ac.ox.cs.pagoda.summary.Graph;
+import uk.ac.ox.cs.pagoda.summary.Node;
+import uk.ac.ox.cs.pagoda.summary.NodeTuple;
+import uk.ac.ox.cs.pagoda.util.Timer;
+import uk.ac.ox.cs.pagoda.util.Utility;
+
+public class DependencyGraph {
+
+        Set<Clique> entrances = new HashSet<Clique>();
+
+        public Set<Clique> getEntrances() {
+                return entrances;
+        }
+        
+        Set<Clique> exits = new HashSet<Clique>();  
+        
+        public Set<Clique> getExits() {
+                return exits;
+        }
+        
+        Map<Clique, Collection<Clique>> outGoingEdges = new HashMap<Clique, Collection<Clique>>();
+        
+        public Map<Clique, Collection<Clique>> getOutGoingEdges() {
+                return outGoingEdges;
+        }
+
+        Map<Clique, Collection<Clique>> inComingEdges = new HashMap<Clique, Collection<Clique>>();
+        
+        public Map<Clique, Collection<Clique>> getInComingEdges() {
+                return inComingEdges;
+        }
+
+        Graph graph; 
+        EndomorphChecker homomorphismChecker;
+        Set<Clique> cliques = new HashSet<Clique>(); 
+        
+        public DependencyGraph(Graph graph) {
+                this.graph = graph; 
+                homomorphismChecker = new EndomorphChecker2(graph);
+//              homomorphismChecker = new EndomorphChecker1(graph);
+        }
+        
+        private int compareNodeTuple(NodeTuple t1, NodeTuple t2) {
+                Iterator<Node> iter1 = t1.getNodes().iterator(); 
+                Iterator<Node> iter2 = t2.getNodes().iterator();
+                int ret; 
+                int index = 0;
+                Node u, v; 
+                while (iter1.hasNext()) {
+                        u = iter1.next(); v = iter2.next();
+                        if (u == null && v == null) {
+                                if ((ret = t1.getAnswerTuple().getGroundTerm(index).toString().compareTo(t2.getAnswerTuple().getGroundTerm(index).toString())) != 0)
+                                        return ret;
+                        }
+                        else if (u != null && v != null) { 
+                                if ((ret = compareNode(u, v)) != 0) return ret;
+                        }
+                        else if (u == null)
+                                return 1; 
+                        else if (v == null)
+                                return -1; 
+                                
+                }
+                
+                return 0; 
+        }
+        
+        private int compareNode(Node o1, Node o2) {
+                int result = o1.getConcepts().size() - o2.getConcepts().size();
+                if (result != 0) return dir(result);
+                Edge[] edge1 = graph.getOutGoingEdges(o1), edge2 = graph.getOutGoingEdges(o2);;
+                int len1 = edge1 == null ? 0 : edge1.length, len2 = edge2 == null ? 0 : edge2.length; 
+                result = len1 - len2; 
+                if (result != 0) return dir(result);
+                
+                edge1 = graph.getInComingEdges(o1); edge2 = graph.getInComingEdges(o2); 
+                len1 = edge1 == null ? 0 : edge1.length; len2 = edge2 == null ? 0 : edge2.length; 
+                result = len1 - len2;
+                if (result != 0) return dir(result);
+                
+                else return o1.getLabel().compareTo(o2.getLabel()); 
+        }
+        
+        private int dir(int flag) { return - flag; }
+        
+        public void build(Collection<NodeTuple> nodeTuples) {
+                
+                if (nodeTuples.isEmpty()) return ;
+                
+                Timer t = new Timer(); 
+                
+                NodeTuple[] nodeTupleArray = new NodeTuple[nodeTuples.size()]; 
+                nodeTuples.toArray(nodeTupleArray); 
+                
+                Arrays.sort(nodeTupleArray, new Comparator<NodeTuple>() {
+                        @Override
+                        public int compare(NodeTuple t1, NodeTuple t2) {
+                                return compareNodeTuple(t1, t2); 
+                        }
+                });
+                
+                Utility.logDebug(nodeTupleArray[0].toString(), 
+                                nodeTupleArray[nodeTupleArray.length - 1].toString()); 
+                
+                for (NodeTuple nodeTuple: nodeTupleArray) addNodeTuple(nodeTuple);
+                
+                Utility.logDebug("The number of times to call homomorphism checker: " + homomorphismCheckCounter + "(" + outGoingCheckCounter + "," + inComingCheckCounter + ").", 
+                                "Time to compute endomorphism relation: " + t.duration());
+                
+//              print(); 
+                
+                topolocialOrder = null;
+                Utility.logInfo("link: " + link);
+        }
+        
+        LinkedList<Clique> topolocialOrder = null; 
+
+        public LinkedList<Clique> getTopologicalOrder() {
+                if (topolocialOrder != null) return topolocialOrder;
+                
+                topolocialOrder = new LinkedList<Clique>(); 
+                Queue<Clique> toVisit = new LinkedList<Clique>(entrances); 
+                Map<Clique, Integer> toVisitedInComingDegree = new HashMap<Clique, Integer>();
+                
+                int count; 
+                while (!toVisit.isEmpty()) {
+                        Clique cu = toVisit.remove();
+                        topolocialOrder.add(cu); 
+                        if (outGoingEdges.containsKey(cu))
+                                for (Clique cv: outGoingEdges.get(cu)) {
+                                        if (toVisitedInComingDegree.containsKey(cv)) {
+                                                count = toVisitedInComingDegree.get(cv) - 1; 
+                                                toVisitedInComingDegree.put(cv, count); 
+                                        }
+                                        else 
+                                                toVisitedInComingDegree.put(cv, count = inComingEdges.get(cv).size() - 1); 
+                                        if (count == 0) 
+                                                toVisit.add(cv); 
+                                }
+                }
+                
+                return topolocialOrder; 
+        }
+
+        private void addNodeTuple(NodeTuple u) {
+                Queue<Clique> toCompare = new LinkedList<Clique>(entrances);
+                
+                Map<Clique, Integer> toVisitedDegree = new HashMap<Clique, Integer>();
+                Collection<Clique> directSuccessors = new LinkedList<Clique>(); 
+                
+                int count; 
+                while (!toCompare.isEmpty()) {
+                        Clique cv = toCompare.remove();
+                        ++outGoingCheckCounter; 
+                        if (checkHomomorphism(u, cv.representative)) {
+                                directSuccessors.add(cv); 
+                        }
+                        else {
+                                if (outGoingEdges.containsKey(cv))
+                                        for (Clique c: outGoingEdges.get(cv)) {
+                                                if (toVisitedDegree.containsKey(c)) {
+                                                        count = toVisitedDegree.get(c) - 1; 
+                                                        toVisitedDegree.put(c, count); 
+                                                }
+                                                else 
+                                                        toVisitedDegree.put(c, count = inComingEdges.get(c).size() - 1);
+                                                
+                                                if (count == 0) 
+                                                        toCompare.add(c);
+                                        }
+                        }
+                }
+                
+                if (directSuccessors.size() == 1) {
+                        Clique clique = directSuccessors.iterator().next();
+                        if (checkHomomorphism(clique.representative, u)) {
+                                clique.addNodeTuple(u);
+                                return ;
+                        }
+                }
+                
+                Clique cu = new Clique(u);
+                cliques.add(cu); 
+                
+                toCompare.clear();
+                Set<Clique> visited = new HashSet<Clique>();  
+                
+                if (directSuccessors.size() == 0) 
+                        toCompare.addAll(exits); 
+                else {
+                        for (Clique cv: directSuccessors)
+                                if (inComingEdges.containsKey(cv))
+                                        for (Clique cw: inComingEdges.get(cv)) {
+                                                visited.add(cw); 
+                                                toCompare.add(cw);
+                                        }
+                }
+                
+                
+                
+                Collection<Clique> directPredecessors = new LinkedList<Clique>(); 
+                        
+                while (!toCompare.isEmpty()) {
+                        Clique cv = toCompare.remove();
+                        ++inComingCheckCounter; 
+                        if (checkHomomorphism(cv.representative, u)) 
+                                directPredecessors.add(cv); 
+                        else {
+                                if (inComingEdges.containsKey(cv))
+                                        for (Clique c: inComingEdges.get(cv)) 
+                                                if (!visited.contains(c)) {
+                                                        visited.add(c); 
+                                                        toCompare.add(c);
+                                                }
+                        }
+                }
+                
+                for (Clique cv: directSuccessors) {
+                        if (entrances.contains(cv)) entrances.remove(cv); 
+                        link(cu, cv); 
+                }
+                
+                for (Clique cw: directPredecessors) {
+                        if (exits.contains(cw)) exits.remove(cw); 
+                        link(cw, cu);
+                }
+                
+                if (directPredecessors.size() == 0) entrances.add(cu); 
+                if (directSuccessors.size() == 0) exits.add(cu); 
+        }
+        
+        private int homomorphismCheckCounter = 0; 
+        private int outGoingCheckCounter = 0, inComingCheckCounter = 0; 
+        
+        private boolean checkHomomorphism(NodeTuple u, NodeTuple v) {
+                ++homomorphismCheckCounter; 
+                homomorphismChecker.setMapping(u, v);
+                try {
+                        Node node1, node2; 
+                        for (Iterator<Node> iter1 = u.getNodes().iterator(), iter2 = v.getNodes().iterator(); iter1.hasNext(); ) {
+                                node1 = iter1.next(); node2 = iter2.next(); 
+                                if (node1 != node2 && !homomorphismChecker.check(node1, node2)) {
+//                                      System.out.println(homomorphismChecker.check(node1, node2)); 
+                                        return false; 
+                                }
+                        }
+                        return true;
+                } finally {
+                        homomorphismChecker.clearMappings(); 
+                }
+        }
+
+        private void link(Clique u, Clique v) {
+                ++link; 
+                addToList(outGoingEdges, u, v); 
+                addToList(inComingEdges, v, u); 
+        }
+        
+        private int link = 0; 
+
+        private void addToList(Map<Clique, Collection<Clique>> map, Clique u, Clique v) {
+                Collection<Clique> temp; 
+                if ((temp = map.get(u)) == null) {
+                        temp = new LinkedList<Clique>(); 
+                        map.put(u, temp); 
+                }
+                temp.add(v); 
+        }
+        
+        public void print() {
+                System.out.println("---------- Dependency Graph -------------"); 
+                for (Clique u: cliques)
+                        if (outGoingEdges.containsKey(u))
+                                for (Clique v: outGoingEdges.get(u)) 
+                                        System.out.println(u + " -> " + v);
+                System.out.println("-----------------------------------------"); 
+        }
+        
+
+}
+