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| author | RncLsn <rnc.lsn@gmail.com> | 2015-05-29 18:35:51 +0100 |
|---|---|---|
| committer | RncLsn <rnc.lsn@gmail.com> | 2015-05-29 18:35:51 +0100 |
| commit | 4b7253559c290b6fdd1c4122830f153fda85dd62 (patch) | |
| tree | 37c1487e4682be719dec532ca3d7e1af353fb9a1 /src/uk/ac/ox/cs/pagoda/reasoner/light/RDFoxQueryEngine.java | |
| parent | 6a559a415b3bdb3048021839e5bcf5bbf5aa4bbd (diff) | |
| download | ACQuA-4b7253559c290b6fdd1c4122830f153fda85dd62.tar.gz ACQuA-4b7253559c290b6fdd1c4122830f153fda85dd62.zip | |
Disposable.
Diffstat (limited to 'src/uk/ac/ox/cs/pagoda/reasoner/light/RDFoxQueryEngine.java')
| -rw-r--r-- | src/uk/ac/ox/cs/pagoda/reasoner/light/RDFoxQueryEngine.java | 219 |
1 files changed, 113 insertions, 106 deletions
diff --git a/src/uk/ac/ox/cs/pagoda/reasoner/light/RDFoxQueryEngine.java b/src/uk/ac/ox/cs/pagoda/reasoner/light/RDFoxQueryEngine.java index 61500f5..f835ba9 100644 --- a/src/uk/ac/ox/cs/pagoda/reasoner/light/RDFoxQueryEngine.java +++ b/src/uk/ac/ox/cs/pagoda/reasoner/light/RDFoxQueryEngine.java | |||
| @@ -13,119 +13,126 @@ import uk.ac.ox.cs.pagoda.reasoner.QueryReasoner; | |||
| 13 | import uk.ac.ox.cs.pagoda.tracking.AnswerTuplesWriter; | 13 | import uk.ac.ox.cs.pagoda.tracking.AnswerTuplesWriter; |
| 14 | import uk.ac.ox.cs.pagoda.util.Timer; | 14 | import uk.ac.ox.cs.pagoda.util.Timer; |
| 15 | import uk.ac.ox.cs.pagoda.util.Utility; | 15 | import uk.ac.ox.cs.pagoda.util.Utility; |
| 16 | import uk.ac.ox.cs.pagoda.util.disposable.DisposedException; | ||
| 16 | 17 | ||
| 17 | import java.io.File; | 18 | import java.io.File; |
| 18 | import java.util.Collection; | 19 | import java.util.Collection; |
| 19 | 20 | ||
| 20 | public abstract class RDFoxQueryEngine implements QueryEngine { | 21 | public abstract class RDFoxQueryEngine extends QueryEngine { |
| 21 | |||
| 22 | public static final int matNoOfThreads = Runtime.getRuntime().availableProcessors() * 2; | ||
| 23 | protected String name; | ||
| 24 | protected Prefixes prefixes = MyPrefixes.PAGOdAPrefixes.getRDFoxPrefixes(); | ||
| 25 | 22 | ||
| 26 | public RDFoxQueryEngine(String name) { | 23 | public static final int matNoOfThreads = Runtime.getRuntime().availableProcessors() * 2; |
| 27 | this.name = name; | 24 | protected String name; |
| 28 | } | 25 | protected Prefixes prefixes = MyPrefixes.PAGOdAPrefixes.getRDFoxPrefixes(); |
| 29 | 26 | ||
| 30 | public static DataStore createDataStore() { | 27 | public RDFoxQueryEngine(String name) { |
| 31 | DataStore instance = null; | 28 | this.name = name; |
| 32 | try { | 29 | } |
| 30 | |||
| 31 | public static DataStore createDataStore() { | ||
| 32 | DataStore instance = null; | ||
| 33 | try { | ||
| 33 | // instance = new DataStore("par-head-n"); | 34 | // instance = new DataStore("par-head-n"); |
| 34 | instance = new DataStore(StoreType.NarrowParallelHead); | 35 | instance = new DataStore(StoreType.NarrowParallelHead); |
| 35 | instance.setNumberOfThreads(matNoOfThreads); | 36 | instance.setNumberOfThreads(matNoOfThreads); |
| 36 | instance.initialize(); | 37 | instance.initialize(); |
| 37 | } catch(JRDFStoreException e) { | 38 | } catch(JRDFStoreException e) { |
| 38 | e.printStackTrace(); | 39 | e.printStackTrace(); |
| 39 | } | 40 | } |
| 40 | return instance; | 41 | return instance; |
| 41 | } | 42 | } |
| 42 | 43 | ||
| 43 | public String getName() { | 44 | public String getName() { |
| 44 | return name; | 45 | if(isDisposed()) throw new DisposedException(); |
| 45 | } | 46 | return name; |
| 46 | 47 | } | |
| 47 | public abstract DataStore getDataStore(); | 48 | |
| 48 | 49 | public abstract DataStore getDataStore(); | |
| 49 | public abstract void dispose(); | 50 | |
| 50 | 51 | public void importRDFData(String fileName, String importedFile) { | |
| 51 | public void importRDFData(String fileName, String importedFile) { | 52 | if(isDisposed()) throw new DisposedException(); |
| 52 | if(importedFile == null || importedFile.isEmpty()) return; | 53 | if(importedFile == null || importedFile.isEmpty()) return; |
| 53 | Timer t = new Timer(); | 54 | Timer t = new Timer(); |
| 54 | DataStore store = getDataStore(); | 55 | DataStore store = getDataStore(); |
| 55 | try { | 56 | try { |
| 56 | long oldTripleCount = store.getTriplesCount(), tripleCount; | 57 | long oldTripleCount = store.getTriplesCount(), tripleCount; |
| 57 | for (String file: importedFile.split(QueryReasoner.ImportDataFileSeparator)) { | 58 | for(String file : importedFile.split(QueryReasoner.ImportDataFileSeparator)) { |
| 58 | store.importTurtleFile(new File(file), prefixes); | 59 | store.importTurtleFile(new File(file), prefixes); |
| 59 | } | 60 | } |
| 60 | tripleCount = store.getTriplesCount(); | 61 | tripleCount = store.getTriplesCount(); |
| 61 | Utility.logDebug(name + " store after importing " + fileName + ": " + tripleCount + " (" + (tripleCount - oldTripleCount) + " new)"); | 62 | Utility.logDebug(name + " store after importing " + fileName + ": " + tripleCount + " (" + (tripleCount - oldTripleCount) + " new)"); |
| 62 | store.clearRulesAndMakeFactsExplicit(); | 63 | store.clearRulesAndMakeFactsExplicit(); |
| 63 | } catch (JRDFStoreException e) { | 64 | } catch(JRDFStoreException e) { |
| 64 | e.printStackTrace(); | 65 | e.printStackTrace(); |
| 65 | } | 66 | } |
| 66 | Utility.logDebug(name + " store finished importing " + fileName + " in " + t.duration() + " seconds."); | 67 | Utility.logDebug(name + " store finished importing " + fileName + " in " + t.duration() + " seconds."); |
| 67 | } | 68 | } |
| 68 | 69 | ||
| 69 | public void importDataFromABoxOf(OWLOntology ontology) { | 70 | public void importDataFromABoxOf(OWLOntology ontology) { |
| 70 | DataStore store = getDataStore(); | 71 | if(isDisposed()) throw new DisposedException(); |
| 71 | try { | 72 | DataStore store = getDataStore(); |
| 72 | long prevTriplesCount = store.getTriplesCount(); | 73 | try { |
| 73 | store.importOntology(ontology.getOWLOntologyManager().createOntology(ontology.getABoxAxioms(true))); | 74 | long prevTriplesCount = store.getTriplesCount(); |
| 74 | long loadedTriples = store.getTriplesCount() - prevTriplesCount; | 75 | store.importOntology(ontology.getOWLOntologyManager().createOntology(ontology.getABoxAxioms(true))); |
| 75 | Utility.logInfo(name + ": loaded " + loadedTriples + " triples from " + ontology.getABoxAxioms(true) | 76 | long loadedTriples = store.getTriplesCount() - prevTriplesCount; |
| 76 | .size() + " ABox axioms"); | 77 | Utility.logInfo(name + ": loaded " + loadedTriples + " triples from " + ontology.getABoxAxioms(true) |
| 77 | } catch(JRDFStoreException | OWLOntologyCreationException e) { | 78 | .size() + " ABox axioms"); |
| 78 | e.printStackTrace(); | 79 | } catch(JRDFStoreException | OWLOntologyCreationException e) { |
| 79 | System.exit(1); | 80 | e.printStackTrace(); |
| 80 | } | 81 | System.exit(1); |
| 81 | 82 | } | |
| 82 | } | 83 | |
| 83 | 84 | } | |
| 84 | public void materialise(String programName, String programText) { | 85 | |
| 85 | if(programText == null) return; | 86 | public void materialise(String programName, String programText) { |
| 86 | Timer t = new Timer(); | 87 | if(isDisposed()) throw new DisposedException(); |
| 87 | DataStore store = getDataStore(); | 88 | if(programText == null) return; |
| 88 | try { | 89 | Timer t = new Timer(); |
| 89 | long oldTripleCount = store.getTriplesCount(), tripleCount; | 90 | DataStore store = getDataStore(); |
| 91 | try { | ||
| 92 | long oldTripleCount = store.getTriplesCount(), tripleCount; | ||
| 90 | // store.addRules(new String[] {programText}); | 93 | // store.addRules(new String[] {programText}); |
| 91 | store.importRules(programText); | 94 | store.importRules(programText); |
| 92 | store.applyReasoning(); | 95 | store.applyReasoning(); |
| 93 | tripleCount = store.getTriplesCount(); | 96 | tripleCount = store.getTriplesCount(); |
| 94 | Utility.logDebug(name + " store after materialising " + programName + ": " + tripleCount + " (" + (tripleCount - oldTripleCount) + " new)"); | 97 | Utility.logDebug(name + " store after materialising " + programName + ": " + tripleCount + " (" + (tripleCount - oldTripleCount) + " new)"); |
| 95 | store.clearRulesAndMakeFactsExplicit(); | 98 | store.clearRulesAndMakeFactsExplicit(); |
| 96 | } catch (JRDFStoreException e) { | 99 | } catch(JRDFStoreException e) { |
| 97 | e.printStackTrace(); | 100 | e.printStackTrace(); |
| 98 | } | 101 | } |
| 99 | Utility.logDebug(name + " store finished the materialisation of " + programName + " in " + t.duration() + " seconds."); | 102 | Utility.logDebug(name + " store finished the materialisation of " + programName + " in " + t.duration() + " seconds."); |
| 100 | } | 103 | } |
| 101 | 104 | ||
| 102 | @Override | 105 | @Override |
| 103 | public void evaluate(Collection<String> queryTexts, String answerFile) { | 106 | public void evaluate(Collection<String> queryTexts, String answerFile) { |
| 104 | if (queryTexts == null) | 107 | if(isDisposed()) throw new DisposedException(); |
| 105 | return ; | 108 | if(queryTexts == null) |
| 106 | 109 | return; | |
| 107 | int queryID = 0; | 110 | |
| 108 | AnswerTuplesWriter answerWriter = new AnswerTuplesWriter(answerFile); | 111 | int queryID = 0; |
| 109 | AnswerTuples answerTuples; | 112 | AnswerTuplesWriter answerWriter = new AnswerTuplesWriter(answerFile); |
| 110 | Timer t = new Timer(); | 113 | AnswerTuples answerTuples; |
| 111 | try { | 114 | Timer t = new Timer(); |
| 112 | for (String query: queryTexts) { | 115 | try { |
| 113 | t.reset(); | 116 | for(String query : queryTexts) { |
| 114 | answerTuples = null; | 117 | t.reset(); |
| 115 | try { | 118 | answerTuples = null; |
| 116 | answerTuples = evaluate(query); | 119 | try { |
| 117 | Utility.logDebug("time to answer Query " + ++queryID + ": " + t.duration()); | 120 | answerTuples = evaluate(query); |
| 118 | answerWriter.write(answerTuples.getAnswerVariables(), answerTuples); | 121 | Utility.logDebug("time to answer Query " + ++queryID + ": " + t.duration()); |
| 119 | } finally { | 122 | answerWriter.write(answerTuples.getAnswerVariables(), answerTuples); |
| 120 | if (answerTuples != null) answerTuples.dispose(); | 123 | } finally { |
| 121 | } | 124 | if(answerTuples != null) answerTuples.dispose(); |
| 122 | } | 125 | } |
| 123 | } finally { | 126 | } |
| 124 | answerWriter.close(); | 127 | } finally { |
| 125 | } | 128 | answerWriter.close(); |
| 126 | 129 | } | |
| 127 | Utility.logDebug("done computing query answers by RDFox."); | 130 | |
| 128 | 131 | Utility.logDebug("done computing query answers by RDFox."); | |
| 129 | } | 132 | } |
| 130 | 133 | ||
| 134 | @Override | ||
| 135 | public void dispose() { | ||
| 136 | super.dispose(); | ||
| 137 | } | ||
| 131 | } | 138 | } |
