[pagoda] Move project to Scala

This commit includes a few changes:
- The repository still uses Maven to manage dependency but it is now a
  Scala project.
- The code has been ported from OWLAPI 3.4.10 to 5.1.20
- A proof of concept program using both RSAComb and PAGOdA has been
  added.

1 files changed, 0 insertions, 50 deletions

diff --git a/src/uk/ac/ox/cs/pagoda/rules/GeneralProgram.java b/src/uk/ac/ox/cs/pagoda/rules/GeneralProgram.java
deleted file mode 100644
index e390a29..0000000
--- a/src/uk/ac/ox/cs/pagoda/rules/GeneralProgram.java
+++ /dev/null
@@ -1,50 +0,0 @@
-package uk.ac.ox.cs.pagoda.rules;
-
-import org.apache.commons.io.FilenameUtils;
-import org.semanticweb.HermiT.model.DLClause;
-import org.semanticweb.owlapi.model.OWLOntology;
-import uk.ac.ox.cs.pagoda.constraints.UnaryBottom;
-
-import java.util.Collection;
-import java.util.Collections;
-import java.util.Set;
-
-public class GeneralProgram extends Program {
-        
-        public GeneralProgram(Set<DLClause> relevantClauses, OWLOntology relevantOntology) {
-                ontology = relevantOntology;
-                
-                ontologyDirectory = null; 
-//              dlOntology = null;
-                botStrategy = new UnaryBottom(); 
-                
-                clauses = botStrategy.process(relevantClauses); 
-        }
-
-        public GeneralProgram() {}
-
-        public Collection<DLClause> convert2Clauses(DLClause clause) {
-                return botStrategy.process(Collections.singleton(clause));
-        }
-
-        @Override
-        public String getOutputPath() {
-                return FilenameUtils.concat(getDirectory(), "rules.dlog");
-        }
-
-//      @Override
-//      public String getDirectory() {
-//              File dir = new File(ontologyDirectory + Utility.FILE_SEPARATOR + "general");
-//              if (!dir.exists())
-//                      dir.mkdirs();
-//              return dir.getPath();
-//      }
-
-        public boolean isHorn() {
-                for (DLClause clause: clauses)
-                        if (clause.getHeadLength() > 1)
-                                return false;
-                return true; 
-        }
-
-}