[pagoda] Move project to Scala

This commit includes a few changes:
- The repository still uses Maven to manage dependency but it is now a
  Scala project.
- The code has been ported from OWLAPI 3.4.10 to 5.1.20
- A proof of concept program using both RSAComb and PAGOdA has been
  added.

1 files changed, 0 insertions, 115 deletions

diff --git a/test/uk/ac/ox/cs/pagoda/global_tests/CostEvaluation.java b/test/uk/ac/ox/cs/pagoda/global_tests/CostEvaluation.java
deleted file mode 100644
index 01e8203..0000000
--- a/test/uk/ac/ox/cs/pagoda/global_tests/CostEvaluation.java
+++ /dev/null
@@ -1,115 +0,0 @@
-package uk.ac.ox.cs.pagoda.global_tests;
-
-import org.semanticweb.owlapi.model.OWLOntology;
-import org.testng.annotations.Test;
-import uk.ac.ox.cs.pagoda.owl.OWLHelper;
-import uk.ac.ox.cs.pagoda.reasoner.QueryReasoner;
-import uk.ac.ox.cs.pagoda.reasoner.QueryReasoner.Type;
-import uk.ac.ox.cs.pagoda.tester.PagodaTester;
-import uk.ac.ox.cs.pagoda.util.TestUtil;
-import uk.ac.ox.cs.pagoda.util.Timer;
-import uk.ac.ox.cs.pagoda.util.Utility;
-
-public class CostEvaluation {   
-        
-        @Test
-        public void lubm100() {
-                int number = 1;
-                String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
-                PagodaTester.main(
-                                TestUtil.combinePaths(ontoDir, "lubm/univ-bench.owl"),
-                                TestUtil.combinePaths(ontoDir, "lubm/data/lubm" + number + ".ttl"),
-                                TestUtil.combinePaths(ontoDir, "lubm/queries/test_all_pagoda.sparql")
-                ); 
-//              AllTests.copy("output/log4j.log", "results-backup/jair/lubm" + number + ".out"); 
-        }
-        
-        public void lubm1000() {
-                int number = 1000;
-                String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
-                String[] args = new String[] {
-                                TestUtil.combinePaths(ontoDir, "lubm/univ-bench.owl"),
-                                TestUtil.combinePaths(ontoDir, "lubm/data/lubm" + number + ".ttl"),
-                                TestUtil.combinePaths(ontoDir, "lubm/queries/test_all_pagoda.sparql")
-                }; 
-                OWLOntology ontology = OWLHelper.loadOntology(args[0]); 
-                QueryReasoner reasoner = QueryReasoner.getInstance(Type.ELHOU, ontology, true, true); 
-                Timer t = new Timer(); 
-                reasoner.loadOntology(ontology);
-                reasoner.importData(args[1]);
-                if (!reasoner.preprocess())
-                        return ; 
-                Utility.logInfo("Preprocessing Done in " + t.duration() + " seconds.");
-                
-                reasoner.evaluate(reasoner.getQueryManager().collectQueryRecords(args[2]));
-//              AllTests.copy("output/log4j.log", "results-backup/jair/lubm" + number + ".out"); 
-        }
-
-        @Test
-        public void uobm5() {
-                int number = 1;
-                String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
-                String[] args = new String[] {
-                                TestUtil.combinePaths(ontoDir, "uobm/univ-bench-dl.owl"),
-                                TestUtil.combinePaths(ontoDir, "uobm/data/uobm" + number + ".ttl"),
-                                TestUtil.combinePaths(ontoDir, "uobm/queries/standard_all_pagoda.sparql")
-                }; 
-                PagodaTester.main(args);
-//              AllTests.copy("output/log4j.log", "results-backup/jair/uobm" + number + ".out"); 
-        }
-        
-        public void uobm100() {
-                int number = 200;
-                String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
-                String[] args = new String[] {
-                                TestUtil.combinePaths(ontoDir, "uobm/univ-bench-dl.owl"),
-                                TestUtil.combinePaths(ontoDir, "uobm/data/uobm" + number + ".ttl"),
-                                TestUtil.combinePaths(ontoDir, "uobm/queries/standard_group3_all.sparql")
-                }; 
-                PagodaTester.main(args);
-//              AllTests.copy("output/log4j.log", "results-backup/jair/uobm" + number + ".out"); 
-        }
-        
-        public void uobm500() {
-                int number = 500;
-                String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
-                String[] args = new String[] {
-                                TestUtil.combinePaths(ontoDir, "uobm/univ-bench-dl.owl"),
-                                TestUtil.combinePaths(ontoDir, "uobm/data/uobm" + number + ".ttl"),
-                                TestUtil.combinePaths(ontoDir, "uobm/queries/standard_all_pagoda.sparql")
-                }; 
-                
-                OWLOntology ontology = OWLHelper.loadOntology(args[0]); 
-                QueryReasoner reasoner = QueryReasoner.getInstance(Type.ELHOU, ontology, true, true);
-                Timer t = new Timer(); 
-                reasoner.loadOntology(ontology);
-                reasoner.importData(args[1]);
-                if (!reasoner.preprocess())
-                        return ; 
-                Utility.logInfo("Preprocessing Done in " + t.duration() + " seconds.");
-                
-                reasoner.evaluate(reasoner.getQueryManager().collectQueryRecords(args[2]));
-//              AllTests.copy("output/log4j.log", "results-backup/jair/uobm" + number + ".out"); 
-        }
-        
-        
-        public static void main(String... args) {
-                String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
-                args = new String[] {
-                                TestUtil.combinePaths(ontoDir, "dbpedia/integratedOntology-all-in-one-minus-datatype.owl"),
-                                TestUtil.combinePaths(ontoDir, "dbpedia/data/dbpedia-minus-datatype-new.ttl"),
-                                TestUtil.combinePaths(ontoDir, "dbpedia/queries/atomic_ground.sparql")
-                }; 
-                
-                OWLOntology ontology = OWLHelper.loadOntology(args[0]); 
-                QueryReasoner reasoner = QueryReasoner.getInstance(Type.ELHOU, ontology, true, true);
-                Timer t = new Timer(); 
-                reasoner.loadOntology(ontology);
-                reasoner.importData(args[1]);
-                if (!reasoner.preprocess())
-                        return ; 
-                Utility.logInfo("Preprocessing Done in " + t.duration() + " seconds.");
-                
-                reasoner.evaluate(reasoner.getQueryManager().collectQueryRecords(args[2]));
-        }
-}