[pagoda] Move project to Scala

This commit includes a few changes:
- The repository still uses Maven to manage dependency but it is now a
  Scala project.
- The code has been ported from OWLAPI 3.4.10 to 5.1.20
- A proof of concept program using both RSAComb and PAGOdA has been
  added.

1 files changed, 0 insertions, 92 deletions

diff --git a/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaLUBM.java b/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaLUBM.java
deleted file mode 100644
index 019fafa..0000000
--- a/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaLUBM.java
+++ /dev/null
@@ -1,92 +0,0 @@
-package uk.ac.ox.cs.pagoda.global_tests;
-
-import org.testng.annotations.Test;
-import uk.ac.ox.cs.pagoda.Pagoda;
-import uk.ac.ox.cs.pagoda.query.CheckAnswers;
-import uk.ac.ox.cs.pagoda.util.TestUtil;
-
-import java.io.File;
-import java.io.IOException;
-import java.nio.file.Path;
-import java.nio.file.Paths;
-
-public class TestPagodaLUBM {
-
-        public void answersCorrectness(int number) throws IOException {
-                String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
-                Path answers = Paths.get(File.createTempFile("answers", ".json").getAbsolutePath());
-                new File(answers.toString()).deleteOnExit();
-                Path givenAnswers = TestUtil.getAnswersFilePath("answers/pagoda-lubm" + number + ".json");
-
-                Pagoda pagoda = Pagoda.builder()
-                                                          .ontology(Paths.get(ontoDir, "lubm/univ-bench.owl"))
-                                                          .data(Paths.get(ontoDir, "lubm/data/lubm" + number + ".ttl"))
-                                                          .query(Paths.get(ontoDir, "lubm/queries/test.sparql"))
-                                                          .answer(answers)
-                                                          .build();
-
-                pagoda.run();
-                CheckAnswers.assertSameAnswers(answers, givenAnswers);
-        }
-
-        @Test(groups = {"light", "correctness"})
-        public void answersCorrectness_1() throws IOException {
-                answersCorrectness(1);
-        }
-
-        public void justExecute_sygenia(int number) throws IOException {
-                String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
-//              Path answers = Paths.get(File.createTempFile("answers", ".json").getAbsolutePath());
-//              new File(answers.toString()).deleteOnExit();
-//              Path givenAnswers = TestUtil.getAnswersFilePath("answers/pagoda-lubm" + number + ".json");
-
-                Pagoda pagoda = Pagoda.builder()
-                                                          .ontology(Paths.get(ontoDir, "lubm/univ-bench.owl"))
-                                                          .data(Paths.get(ontoDir, "lubm/data/lubm" + number + ".ttl"))
-                                              .query(Paths.get(ontoDir, "lubm/queries/lubm_sygenia.sparql"))
-//                                                        .answer(answers)
-                                              .build();
-
-                pagoda.run();
-//              CheckAnswers.assertSameAnswers(answers, givenAnswers);
-        }
-
-        @Test(groups = {"sygenia"})
-        public void justExecute_sygenia_1() throws IOException {
-                justExecute_sygenia(1);
-        }
-
-        public void justExecute_sygenia_allBlanks(int number) throws IOException {
-                String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
-//              Path answers = Paths.get(File.createTempFile("answers", ".json").getAbsolutePath());
-//              new File(answers.toString()).deleteOnExit();
-//              Path givenAnswers = TestUtil.getAnswersFilePath("answers/pagoda-lubm" + number + ".json");
-
-                Pagoda pagoda = Pagoda.builder()
-                                                          .ontology(Paths.get(ontoDir, "lubm/univ-bench.owl"))
-                                                          .data(Paths.get(ontoDir, "lubm/data/lubm" + number + ".ttl"))
-                                .query(Paths.get(ontoDir, "lubm/queries/lubm_sygenia_all-blanks.sparql"))
-//                                                        .answer(answers)
-                                .build();
-
-                pagoda.run();
-//              CheckAnswers.assertSameAnswers(answers, givenAnswers);
-        }
-
-        @Test(groups = {"sygenia"})
-        public void justExecute_sygenia_1_allBlanks() throws IOException {
-                justExecute_sygenia_allBlanks(1);
-        }
-
-    @Test(groups = {"existential"})
-    public void justExecute_feier() throws IOException {
-        String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
-
-        Pagoda.builder()
-              .ontology(Paths.get(ontoDir, "lubm/univ-bench.owl"))
-              .data(Paths.get(ontoDir, "lubm/data/lubm1.ttl"))
-              .query(Paths.get(ontoDir, "lubm/queries/queries_from_rules.sparql"))
-              .build()
-              .run();
-    }
-}