Switch from JUnit to TestNG.

Plus minor fixes.

1 files changed, 0 insertions, 86 deletions

diff --git a/test/uk/ac/ox/cs/pagoda/junit/JAIR_Scalability.java b/test/uk/ac/ox/cs/pagoda/junit/JAIR_Scalability.java
deleted file mode 100644
index 5e2b1d7..0000000
--- a/test/uk/ac/ox/cs/pagoda/junit/JAIR_Scalability.java
+++ /dev/null
@@ -1,86 +0,0 @@
-package uk.ac.ox.cs.pagoda.junit;
-
-import org.junit.Test;
-
-import uk.ac.ox.cs.pagoda.tester.PagodaTester;
-import uk.ac.ox.cs.pagoda.util.Properties;
-
-public class JAIR_Scalability {
-        
-        private static final String date = "_0123"; 
-
-        @Test
-        public void reactome() {
-                testReactome(10, false);
-        }
-        
-        @Test
-        public void chembl() {
-                testChEMBL(1, false);
-        }
-
-        @Test
-        public void uniprot() {
-                testUniProt(1, false);
-        }
-
-        public void testReactome(int percentage, boolean save) {
-                String[] args = new String[] {
-                                PagodaTester.onto_dir + "bio2rdf/reactome/biopax-level3-processed.owl", 
-                                PagodaTester.onto_dir + "bio2rdf/reactome/graph sampling/simplifed_sample_" + percentage + ".ttl", 
-                                PagodaTester.onto_dir + "bio2rdf/reactome/queries/test.sparql"
-                                , "reactome.ans"
-                }; 
-                if (percentage == 10)
-                        args[1] = args[1].replace("simplifed", "reactome");
-                
-                PagodaTester.main(args); 
-                if (save)
-                        AllTests.copy("log4j.log", "/home/yzhou/java-workspace/test-share/results_new/reactome/pagoda_" + percentage + "p" + date); 
-        }
-        
-        public void testChEMBL(int percentage, boolean save) {
-                String[] args = new String[] {
-                                PagodaTester.onto_dir + "bio2rdf/chembl/cco-noDPR.ttl", 
-                                PagodaTester.onto_dir + "bio2rdf/chembl/sample_" + percentage + ".nt",
-//                              PagodaTester.onto_dir + "bio2rdf/chembl/queries/atomic_ground.sparql"
-                                PagodaTester.onto_dir + "bio2rdf/chembl/queries/test.sparql"
-                                , "chembl.ans"
-                }; 
-                if (percentage == 1 || percentage == 10 || percentage == 50)
-                        args[1] = args[1].replace("chembl", "chembl/graph sampling");
-                else 
-                        if (percentage == 100)
-                                args[1] = "/home/yzhou/RDFData/ChEMBL/facts/ChEMBL.ttl"; 
-                
-                PagodaTester.main(args);
-                if (save)
-                AllTests.copy("log4j.log", "/home/yzhou/java-workspace/test-share/results_new/chembl/pagoda_" + percentage + "p" + date); 
-        }
-        
-        public void testUniProt(int percentage, boolean save) {
-                String[] args = new String[] {
-                                PagodaTester.onto_dir + "bio2rdf/uniprot/core-sat-processed.owl", 
-                                PagodaTester.onto_dir + "bio2rdf/uniprot/sample_" + percentage + ".nt",
-//                              PagodaTester.onto_dir + "bio2rdf/uniprot/queries/atomic_ground.sparql"
-                                PagodaTester.onto_dir + "bio2rdf/uniprot/queries/test.sparql"
-                                , "uniprot.ans"
-                }; 
-                
-                if (percentage == 1 || percentage == 10 || percentage == 50)
-                        args[1] = args[1].replace("uniprot", "uniprot/graph sampling");
-                else 
-                        if (percentage == 100)
-                                args[1] = "/home/yzhou/krr-nas-share/Yujiao/ontologies/bio2rdf/uniprot/data/uniprot_cleaned.nt"; 
-                
-                PagodaTester.main(args); 
-                if (save)
-                        AllTests.copy("log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uniprot/pagoda_" + percentage + "p" + date); 
-        }
-        
-        public static void main(String... args) {
-                Properties.ShellModeDefault = true; 
-                new JAIR_Scalability().testUniProt(50, false);
-        }
-
-}