[pagoda] Move project to Scala

This commit includes a few changes:
- The repository still uses Maven to manage dependency but it is now a
  Scala project.
- The code has been ported from OWLAPI 3.4.10 to 5.1.20
- A proof of concept program using both RSAComb and PAGOdA has been
  added.

1 files changed, 0 insertions, 29 deletions

diff --git a/test/uk/ac/ox/cs/pagoda/tester/OWLTester.java b/test/uk/ac/ox/cs/pagoda/tester/OWLTester.java
deleted file mode 100644
index 5bc1a9b..0000000
--- a/test/uk/ac/ox/cs/pagoda/tester/OWLTester.java
+++ /dev/null
@@ -1,29 +0,0 @@
-package uk.ac.ox.cs.pagoda.tester;
-
-import org.semanticweb.owlapi.model.OWLOntology;
-import org.semanticweb.owlapi.model.OWLOntologyCreationException;
-import org.semanticweb.owlapi.model.OWLOntologyManager;
-
-import uk.ac.ox.cs.pagoda.owl.OWLHelper;
-
-public class OWLTester {
-
-        public static void main(String[] args) throws OWLOntologyCreationException {
-//              OWLOntology onto = OWLHelper.loadOntology("dbpedia_imported.owl");
-                OWLOntology onto = OWLHelper.loadOntology("reactome_imported.owl");
-                OWLOntologyManager manager = onto.getOWLOntologyManager();
-//              OWLOntology data = manager.loadOntology(IRI.create("file:/media/krr-nas-share/Yujiao/ontologies/bio2rdf/reactome/graph\ sampling/sample_1_new.ttl"));
-//              System.out.println("data: " + data.getAxiomCount() + " " + data.getABoxAxioms(true).size()); 
-                for (OWLOntology t: manager.getOntologies()) {
-                        System.out.println(t.getOntologyID());
-                        System.out.println(t.getAxiomCount() + " " + onto.getABoxAxioms(true).size()); 
-                }
-                System.out.println("In closure: " + onto.getImportsClosure().size()); 
-                for (OWLOntology t: onto.getImportsClosure())
-                        System.out.println(t.getOntologyID());
-                
-                System.out.println(onto.getAxiomCount() + " " + onto.getABoxAxioms(true).size()); 
-        }
-
-}
-