diff options
Diffstat (limited to 'src/uk/ac/ox/cs/pagoda/approx/RLPlusOntology.java')
| -rw-r--r-- | src/uk/ac/ox/cs/pagoda/approx/RLPlusOntology.java | 1132 |
1 files changed, 570 insertions, 562 deletions
diff --git a/src/uk/ac/ox/cs/pagoda/approx/RLPlusOntology.java b/src/uk/ac/ox/cs/pagoda/approx/RLPlusOntology.java index b92bceb..638a151 100644 --- a/src/uk/ac/ox/cs/pagoda/approx/RLPlusOntology.java +++ b/src/uk/ac/ox/cs/pagoda/approx/RLPlusOntology.java | |||
| @@ -23,577 +23,585 @@ import java.util.regex.Pattern; | |||
| 23 | 23 | ||
| 24 | public class RLPlusOntology implements KnowledgeBase { | 24 | public class RLPlusOntology implements KnowledgeBase { |
| 25 | 25 | ||
| 26 | private static final String DEFAULT_ONTOLOGY_FILE_EXTENSION = "owl"; | 26 | private static final String DEFAULT_ONTOLOGY_FILE_EXTENSION = "owl"; |
| 27 | private static final Pattern ONTOLOGY_ID_REGEX = Pattern.compile("ontologyid\\((?<id>[a-z0-9\\-]+)\\)"); | 27 | private static final Pattern ONTOLOGY_ID_REGEX = Pattern.compile("ontologyid\\((?<id>[a-z0-9\\-]+)\\)"); |
| 28 | OWLOntologyManager manager; | 28 | OWLOntologyManager manager; |
| 29 | OWLDataFactory factory; | 29 | OWLDataFactory factory; |
| 30 | String ontologyIRI; | 30 | String ontologyIRI; |
| 31 | String corrFileName = null; | 31 | String corrFileName = null; |
| 32 | String outputPath, aBoxPath; | 32 | String outputPath, aBoxPath; |
| 33 | OWLOntology inputOntology = null; | 33 | OWLOntology inputOntology = null; |
| 34 | OWLOntology tBox = null; | 34 | OWLOntology tBox = null; |
| 35 | OWLOntology aBox = null; | 35 | OWLOntology aBox = null; |
| 36 | OWLOntology restOntology = null; | 36 | OWLOntology restOntology = null; |
| 37 | OWLOntology outputOntology = null; //RL ontology | 37 | OWLOntology outputOntology = null; //RL ontology |
| 38 | DLOntology dlOntology = null; | 38 | DLOntology dlOntology = null; |
| 39 | int rlCounter = 0; | 39 | int rlCounter = 0; |
| 40 | LinkedList<Clause> clauses; | 40 | LinkedList<Clause> clauses; |
| 41 | Map<OWLAxiom, OWLAxiom> correspondence; | 41 | Map<OWLAxiom, OWLAxiom> correspondence; |
| 42 | BottomStrategy botStrategy; | 42 | BottomStrategy botStrategy; |
| 43 | Random random = new Random(19900114); | 43 | Random random = new Random(19900114); |
| 44 | private Map<OWLClassExpression, Integer> subCounter = null; | 44 | private Map<OWLClassExpression, Integer> subCounter = null; |
| 45 | private Map<OWLClass, OWLClass> atomic2negation = new HashMap<OWLClass, OWLClass>(); | 45 | private Map<OWLClass, OWLClass> atomic2negation = new HashMap<OWLClass, OWLClass>(); |
| 46 | 46 | ||
| 47 | // FIXME multiple anonymous ontologies | 47 | // TODO don't know if it is correct |
| 48 | @Override | 48 | @Override |
| 49 | public void load(OWLOntology ontology, uk.ac.ox.cs.pagoda.constraints.BottomStrategy bottomStrategy) { | 49 | public void load(OWLOntology ontology, uk.ac.ox.cs.pagoda.constraints.BottomStrategy bottomStrategy) { |
| 50 | if (bottomStrategy instanceof UnaryBottom) | 50 | if(bottomStrategy instanceof UnaryBottom) |
| 51 | botStrategy = BottomStrategy.UNARY; | 51 | botStrategy = BottomStrategy.UNARY; |
| 52 | else if (bottomStrategy instanceof NullaryBottom) | 52 | else if(bottomStrategy instanceof NullaryBottom) |
| 53 | botStrategy = BottomStrategy.NULLARY; | 53 | botStrategy = BottomStrategy.NULLARY; |
| 54 | else | 54 | else |
| 55 | botStrategy = BottomStrategy.TOREMOVE; | 55 | botStrategy = BottomStrategy.TOREMOVE; |
| 56 | 56 | ||
| 57 | if(corrFileName == null) | 57 | if(corrFileName == null) |
| 58 | corrFileName = "rlplus.crr"; | 58 | corrFileName = "rlplus.crr"; |
| 59 | manager = ontology.getOWLOntologyManager(); | 59 | manager = ontology.getOWLOntologyManager(); |
| 60 | // manager = OWLManager.createOWLOntologyManager(); | 60 | // manager = OWLManager.createOWLOntologyManager(); |
| 61 | factory = manager.getOWLDataFactory(); | 61 | factory = manager.getOWLDataFactory(); |
| 62 | inputOntology = ontology; | 62 | inputOntology = ontology; |
| 63 | 63 | ||
| 64 | try { | 64 | try { |
| 65 | IRI ontologyIri; | 65 | IRI ontologyIri; |
| 66 | if(ontology.isAnonymous()) { | 66 | if(ontology.isAnonymous()) { |
| 67 | Matcher matcher = ONTOLOGY_ID_REGEX.matcher(ontology.getOntologyID().toString().toLowerCase()); | 67 | Matcher matcher = ONTOLOGY_ID_REGEX.matcher(ontology.getOntologyID().toString().toLowerCase()); |
| 68 | if(!matcher.matches()) throw new Error("Anonymous ontology without internal id"); | 68 | if(!matcher.matches()) throw new Error("Anonymous ontology without internal id"); |
| 69 | ontologyIri = | 69 | ontologyIri = |
| 70 | IRI.create("http://www.example.org/", matcher.group("id") + "." + DEFAULT_ONTOLOGY_FILE_EXTENSION); | 70 | IRI.create("http://www.example.org/", matcher.group("id") + "." + DEFAULT_ONTOLOGY_FILE_EXTENSION); |
| 71 | } | 71 | } |
| 72 | else | 72 | else |
| 73 | ontologyIri = inputOntology.getOntologyID().getOntologyIRI(); | 73 | ontologyIri = inputOntology.getOntologyID().getOntologyIRI(); |
| 74 | 74 | ||
| 75 | String ontologyIriPrefix = ontologyIri.getNamespace(); | 75 | String ontologyIriPrefix = ontologyIri.getNamespace(); |
| 76 | ontologyIRI = ontologyIri.toString(); | 76 | ontologyIRI = ontologyIri.toString(); |
| 77 | String ontologyIriFragment = ontologyIri.getFragment(); | 77 | String ontologyIriFragment = ontologyIri.getFragment(); |
| 78 | String originalFileName = FilenameUtils.removeExtension(ontologyIriFragment); | 78 | String originalFileName = FilenameUtils.removeExtension(ontologyIriFragment); |
| 79 | String originalExtension = FilenameUtils.getExtension(ontologyIriFragment); | 79 | String originalExtension = FilenameUtils.getExtension(ontologyIriFragment); |
| 80 | if(originalExtension.isEmpty()) originalExtension = DEFAULT_ONTOLOGY_FILE_EXTENSION; | 80 | if(originalExtension.isEmpty()) originalExtension = DEFAULT_ONTOLOGY_FILE_EXTENSION; |
| 81 | 81 | ||
| 82 | 82 | ||
| 83 | IRI rlOntologyIRI = IRI.create(ontologyIriPrefix, originalFileName + "-RL." + originalExtension); | 83 | IRI rlOntologyIRI = IRI.create(ontologyIriPrefix, originalFileName + "-RL." + originalExtension); |
| 84 | outputPath = Paths.get(Utility.getGlobalTempDirAbsolutePath(), | 84 | outputPath = Paths.get(Utility.getGlobalTempDirAbsolutePath(), |
| 85 | originalFileName + "-RL." + originalExtension).toString(); | 85 | originalFileName + "-RL." + originalExtension).toString(); |
| 86 | IRI rlDocumentIRI = IRI.create("file://" + outputPath); | 86 | IRI rlDocumentIRI = IRI.create("file://" + outputPath); |
| 87 | outputOntology = manager.createOntology(rlOntologyIRI); | 87 | outputOntology = manager.createOntology(rlOntologyIRI); |
| 88 | manager.setOntologyDocumentIRI(outputOntology, rlDocumentIRI); | 88 | manager.setOntologyDocumentIRI(outputOntology, rlDocumentIRI); |
| 89 | 89 | ||
| 90 | String tBoxOntologyFragment = originalFileName + "-TBox." + originalExtension; | 90 | String tBoxOntologyFragment = originalFileName + "-TBox." + originalExtension; |
| 91 | IRI tBoxOntologyIRI = IRI.create(ontologyIriPrefix, tBoxOntologyFragment); | 91 | IRI tBoxOntologyIRI = IRI.create(ontologyIriPrefix, tBoxOntologyFragment); |
| 92 | IRI tBoxDocumentIRI = | 92 | IRI tBoxDocumentIRI = |
| 93 | IRI.create("file://" + Paths.get(Utility.getGlobalTempDirAbsolutePath(), tBoxOntologyFragment)); | 93 | IRI.create("file://" + Paths.get(Utility.getGlobalTempDirAbsolutePath(), tBoxOntologyFragment)); |
| 94 | 94 | ||
| 95 | String aBoxOntologyFragment = originalFileName + "-ABox." + originalExtension; | 95 | String aBoxOntologyFragment = originalFileName + "-ABox." + originalExtension; |
| 96 | IRI aBoxOntologyIRI = IRI.create(ontologyIriPrefix, aBoxOntologyFragment); | 96 | IRI aBoxOntologyIRI = IRI.create(ontologyIriPrefix, aBoxOntologyFragment); |
| 97 | aBoxPath = Paths.get(Utility.getGlobalTempDirAbsolutePath()) + aBoxOntologyFragment; | 97 | aBoxPath = Paths.get(Utility.getGlobalTempDirAbsolutePath(), aBoxOntologyFragment).toString(); |
| 98 | IRI aBoxDocumentIRI = | 98 | IRI aBoxDocumentIRI = |
| 99 | IRI.create("file://" + Paths.get(Utility.getGlobalTempDirAbsolutePath(), aBoxOntologyFragment)); | 99 | IRI.create("file://" + Paths.get(Utility.getGlobalTempDirAbsolutePath(), aBoxOntologyFragment)); |
| 100 | 100 | ||
| 101 | tBox = manager.createOntology(tBoxOntologyIRI); | 101 | tBox = manager.createOntology(tBoxOntologyIRI); |
| 102 | aBox = manager.createOntology(aBoxOntologyIRI); | 102 | aBox = manager.createOntology(aBoxOntologyIRI); |
| 103 | manager.setOntologyDocumentIRI(tBox, tBoxDocumentIRI); | 103 | manager.setOntologyDocumentIRI(tBox, tBoxDocumentIRI); |
| 104 | manager.setOntologyDocumentIRI(aBox, aBoxDocumentIRI); | 104 | manager.setOntologyDocumentIRI(aBox, aBoxDocumentIRI); |
| 105 | 105 | ||
| 106 | FileOutputStream aBoxOut = new FileOutputStream(aBoxPath); | 106 | FileOutputStream aBoxOut = new FileOutputStream(aBoxPath); |
| 107 | manager.saveOntology(aBox, aBoxOut); | 107 | manager.saveOntology(aBox, aBoxOut); |
| 108 | aBoxOut.close(); | 108 | aBoxOut.close(); |
| 109 | 109 | ||
| 110 | restOntology = manager.createOntology(); | 110 | restOntology = manager.createOntology(); |
| 111 | } catch(OWLOntologyCreationException | OWLOntologyStorageException | IOException e) { | 111 | } catch(OWLOntologyCreationException | OWLOntologyStorageException | IOException e) { |
| 112 | e.printStackTrace(); | 112 | e.printStackTrace(); |
| 113 | System.exit(1); | 113 | System.exit(1); |
| 114 | } | 114 | } |
| 115 | } | 115 | } |
| 116 | 116 | ||
| 117 | public OWLOntology getTBox() { | 117 | public OWLOntology getTBox() { |
| 118 | return tBox; | 118 | return tBox; |
| 119 | } | 119 | } |
| 120 | 120 | ||
| 121 | public String getABoxPath() { | 121 | public String getABoxPath() { |
| 122 | return aBoxPath; | 122 | return aBoxPath; |
| 123 | } | 123 | } |
| 124 | 124 | ||
| 125 | private void add2SubCounter(OWLClassExpression exp) { | 125 | public void simplify() { |
| 126 | Integer count = subCounter.get(exp); | 126 | if(simplifyABox()) { |
| 127 | if (count == null) count = 0; | 127 | save(aBox); |
| 128 | ++count; | ||
| 129 | subCounter.put(exp, count); | ||
| 130 | } | ||
| 131 | |||
| 132 | public void simplify() { | ||
| 133 | if(simplifyABox()) { | ||
| 134 | save(aBox); | ||
| 135 | // save(tBox); | 128 | // save(tBox); |
| 136 | } else | 129 | } |
| 137 | tBox = inputOntology; | 130 | else |
| 138 | } | 131 | tBox = inputOntology; |
| 132 | } | ||
| 139 | 133 | ||
| 140 | @Override | 134 | @Override |
| 141 | public void transform() { | 135 | public void transform() { |
| 142 | simplify(); | 136 | simplify(); |
| 143 | filter(); | 137 | filter(); |
| 144 | clausify(); | 138 | clausify(); |
| 145 | 139 | ||
| 146 | subCounter = new HashMap<OWLClassExpression, Integer>(); | 140 | subCounter = new HashMap<OWLClassExpression, Integer>(); |
| 147 | clauses = new LinkedList<Clause>(); | 141 | clauses = new LinkedList<Clause>(); |
| 148 | Clausifier clausifier = Clausifier.getInstance(restOntology); | 142 | Clausifier clausifier = Clausifier.getInstance(restOntology); |
| 149 | 143 | ||
| 150 | for (DLClause c: dlOntology.getDLClauses()) { | 144 | for(DLClause c : dlOntology.getDLClauses()) { |
| 151 | Clause clause = new Clause(clausifier, c); | 145 | Clause clause = new Clause(clausifier, c); |
| 152 | clauses.add(clause); | 146 | clauses.add(clause); |
| 153 | 147 | ||
| 154 | /* | 148 | /* |
| 155 | * count the expressions in the left | 149 | * count the expressions in the left |
| 156 | */ | 150 | */ |
| 157 | for (OWLClassExpression exp: clause.getSubClasses()) { | 151 | for(OWLClassExpression exp : clause.getSubClasses()) { |
| 158 | if(exp instanceof OWLClass) | 152 | if(exp instanceof OWLClass) |
| 159 | add2SubCounter(exp); | 153 | add2SubCounter(exp); |
| 160 | else if (exp instanceof OWLObjectSomeValuesFrom) { | 154 | else if(exp instanceof OWLObjectSomeValuesFrom) { |
| 161 | OWLObjectSomeValuesFrom someValue = (OWLObjectSomeValuesFrom)exp; | 155 | OWLObjectSomeValuesFrom someValue = (OWLObjectSomeValuesFrom) exp; |
| 162 | add2SubCounter(factory.getOWLObjectSomeValuesFrom(someValue.getProperty(), factory.getOWLThing())); | 156 | add2SubCounter(factory.getOWLObjectSomeValuesFrom(someValue.getProperty(), factory.getOWLThing())); |
| 163 | add2SubCounter(someValue.getFiller()); | 157 | add2SubCounter(someValue.getFiller()); |
| 164 | } | 158 | } |
| 165 | else if (exp instanceof OWLObjectMinCardinality) { | 159 | else if(exp instanceof OWLObjectMinCardinality) { |
| 166 | OWLObjectMinCardinality minCard = (OWLObjectMinCardinality)exp; | 160 | OWLObjectMinCardinality minCard = (OWLObjectMinCardinality) exp; |
| 167 | add2SubCounter(factory.getOWLObjectSomeValuesFrom(minCard.getProperty(), factory.getOWLThing())); | 161 | add2SubCounter(factory.getOWLObjectSomeValuesFrom(minCard.getProperty(), factory.getOWLThing())); |
| 168 | add2SubCounter(minCard.getFiller()); | 162 | add2SubCounter(minCard.getFiller()); |
| 169 | } else | 163 | } |
| 170 | Utility.logError("strange class expression: " + exp); | 164 | else |
| 171 | 165 | Utility.logError("strange class expression: " + exp); | |
| 172 | } | 166 | |
| 173 | } | 167 | } |
| 174 | 168 | } | |
| 175 | correspondence = new HashMap<OWLAxiom, OWLAxiom>(); | 169 | |
| 176 | Set<OWLAxiom> addedAxioms = new HashSet<OWLAxiom>(); | 170 | correspondence = new HashMap<OWLAxiom, OWLAxiom>(); |
| 177 | OWLClassExpression subExp; | 171 | Set<OWLAxiom> addedAxioms = new HashSet<OWLAxiom>(); |
| 178 | for (Clause clause: clauses) { | 172 | OWLClassExpression subExp; |
| 179 | subExp = uk.ac.ox.cs.pagoda.owl.OWLHelper.getSimplifiedConjunction(factory, clause.getSubClasses()); | 173 | for(Clause clause : clauses) { |
| 180 | addedAxioms.clear(); | 174 | subExp = uk.ac.ox.cs.pagoda.owl.OWLHelper.getSimplifiedConjunction(factory, clause.getSubClasses()); |
| 181 | for (OWLClassExpression exp: getDisjunctionApprox0(clause.getSuperClasses())) { | 175 | addedAxioms.clear(); |
| 182 | addedAxioms.add(factory.getOWLSubClassOfAxiom(subExp, transform(exp, addedAxioms))); | 176 | for(OWLClassExpression exp : getDisjunctionApprox0(clause.getSuperClasses())) { |
| 183 | for(OWLAxiom a : addedAxioms) | 177 | addedAxioms.add(factory.getOWLSubClassOfAxiom(subExp, transform(exp, addedAxioms))); |
| 184 | addAxiom2output(a, factory.getOWLSubClassOfAxiom(subExp, | 178 | for(OWLAxiom a : addedAxioms) |
| 185 | OWLHelper.getSimplifiedDisjunction(factory, clause.getSuperClasses()))); | 179 | addAxiom2output(a, factory.getOWLSubClassOfAxiom(subExp, |
| 186 | } | 180 | OWLHelper.getSimplifiedDisjunction(factory, clause.getSuperClasses()))); |
| 187 | } | 181 | } |
| 188 | 182 | } | |
| 189 | subCounter.clear(); | 183 | |
| 190 | } | 184 | subCounter.clear(); |
| 191 | 185 | } | |
| 192 | @Override | 186 | |
| 193 | public void save() { | 187 | @Override |
| 194 | if (corrFileName != null) | 188 | public void save() { |
| 195 | save(correspondence, corrFileName); | 189 | if(corrFileName != null) |
| 196 | save(outputOntology); | 190 | save(correspondence, corrFileName); |
| 197 | } | 191 | save(outputOntology); |
| 198 | 192 | } | |
| 199 | private void save(Map<OWLAxiom, OWLAxiom> map, String corrFileName) { | 193 | |
| 200 | if (corrFileName == null) return ; | 194 | public OWLOntologyManager getOWLOntologyManager() { |
| 201 | ObjectOutput output; | 195 | return inputOntology.getOWLOntologyManager(); |
| 202 | try { | 196 | } |
| 203 | output = new ObjectOutputStream(new BufferedOutputStream(new FileOutputStream(corrFileName))); | 197 | |
| 204 | output.writeObject(map); | 198 | public String getOntologyIRI() { |
| 205 | output.close(); | 199 | return ontologyIRI; |
| 206 | } catch (IOException e) { | 200 | } |
| 207 | e.printStackTrace(); | 201 | |
| 208 | } | 202 | public OWLOntology getOutputOntology() { |
| 209 | } | 203 | return outputOntology; |
| 210 | 204 | } | |
| 211 | protected void save(OWLOntology onto) { | 205 | |
| 212 | try { | 206 | @Override |
| 213 | onto.getOWLOntologyManager().saveOntology(onto); | 207 | public String getOutputPath() { |
| 214 | } catch (OWLOntologyStorageException e) { | 208 | return outputPath; |
| 215 | e.printStackTrace(); | 209 | } |
| 216 | } | 210 | |
| 217 | } | 211 | @Override |
| 218 | 212 | public String getDirectory() { | |
| 219 | /* | 213 | return outputPath.substring(0, outputPath.lastIndexOf(Utility.FILE_SEPARATOR)); |
| 220 | * treat disjunction as conjunction | 214 | } |
| 221 | */ | 215 | |
| 222 | private Set<OWLClassExpression> getDisjunctionApprox0(Set<OWLClassExpression> superClasses) { | 216 | public void setCorrespondenceFileLoc(String path) { |
| 223 | return superClasses; | 217 | corrFileName = path; |
| 224 | } | 218 | } |
| 225 | 219 | ||
| 226 | /* | 220 | private void add2SubCounter(OWLClassExpression exp) { |
| 227 | * choose one simple class disjunct | 221 | Integer count = subCounter.get(exp); |
| 228 | */ | 222 | if(count == null) count = 0; |
| 229 | @SuppressWarnings("unused") | 223 | ++count; |
| 230 | private Set<OWLClassExpression> getDisjunctionApprox1(Set<OWLClassExpression> superClasses) { | 224 | subCounter.put(exp, count); |
| 231 | if(superClasses.isEmpty() || superClasses.size() == 1) | 225 | } |
| 232 | return superClasses; | 226 | |
| 233 | 227 | private void save(Map<OWLAxiom, OWLAxiom> map, String corrFileName) { | |
| 234 | OWLClassExpression rep = null; | 228 | if(corrFileName == null) return; |
| 235 | int min = Integer.MAX_VALUE, o; | 229 | ObjectOutput output; |
| 236 | for(OWLClassExpression exp : superClasses) | 230 | try { |
| 237 | if(exp instanceof OWLClass && (o = getOccurrence(exp)) < min) { | 231 | output = new ObjectOutputStream(new BufferedOutputStream(new FileOutputStream(corrFileName))); |
| 238 | min = o; | 232 | output.writeObject(map); |
| 239 | rep = exp; | 233 | output.close(); |
| 240 | } | 234 | } catch(IOException e) { |
| 241 | 235 | e.printStackTrace(); | |
| 242 | if(rep == null) rep = superClasses.iterator().next(); | 236 | } |
| 243 | 237 | } | |
| 244 | return Collections.singleton(rep); | 238 | |
| 245 | } | 239 | protected void save(OWLOntology onto) { |
| 246 | 240 | try { | |
| 247 | /* | 241 | onto.getOWLOntologyManager().saveOntology(onto); |
| 248 | * randomly choose a class expression to represent this disjunction | 242 | } catch(OWLOntologyStorageException e) { |
| 249 | */ | 243 | e.printStackTrace(); |
| 250 | @SuppressWarnings("unused") | 244 | } |
| 251 | private Set<OWLClassExpression> getDisjunctionApprox2(Set<OWLClassExpression> superClasses) { | 245 | } |
| 252 | if(superClasses.isEmpty() || superClasses.size() == 1) | 246 | |
| 253 | return superClasses; | 247 | /* |
| 254 | 248 | * treat disjunction as conjunction | |
| 255 | int index = random.nextInt() % superClasses.size(); | 249 | */ |
| 256 | if (index < 0) index += superClasses.size(); | 250 | private Set<OWLClassExpression> getDisjunctionApprox0(Set<OWLClassExpression> superClasses) { |
| 257 | 251 | return superClasses; | |
| 258 | int i = 0; | 252 | } |
| 259 | for(OWLClassExpression exp : superClasses) | 253 | |
| 260 | if (i++ == index) | 254 | /* |
| 261 | return Collections.singleton(exp); | 255 | * choose one simple class disjunct |
| 262 | return null; | 256 | */ |
| 263 | } | 257 | @SuppressWarnings("unused") |
| 264 | 258 | private Set<OWLClassExpression> getDisjunctionApprox1(Set<OWLClassExpression> superClasses) { | |
| 265 | /* | 259 | if(superClasses.isEmpty() || superClasses.size() == 1) |
| 266 | * choose the one that appears least in the l.h.s. | 260 | return superClasses; |
| 267 | */ | 261 | |
| 268 | @SuppressWarnings("unused") | 262 | OWLClassExpression rep = null; |
| 269 | private Set<OWLClassExpression> getDisjunctionApprox3(Set<OWLClassExpression> superClasses) { | 263 | int min = Integer.MAX_VALUE, o; |
| 270 | if(superClasses.isEmpty() || superClasses.size() == 1) | 264 | for(OWLClassExpression exp : superClasses) |
| 271 | return superClasses; | 265 | if(exp instanceof OWLClass && (o = getOccurrence(exp)) < min) { |
| 272 | 266 | min = o; | |
| 273 | OWLClassExpression rep = null, exp1; | 267 | rep = exp; |
| 274 | int occurrence = Integer.MAX_VALUE, o; | 268 | } |
| 275 | for (OWLClassExpression exp: superClasses) { | 269 | |
| 276 | o = 0; | 270 | if(rep == null) rep = superClasses.iterator().next(); |
| 277 | exp1 = exp; | 271 | |
| 278 | if (exp instanceof OWLObjectMinCardinality) { | 272 | return Collections.singleton(rep); |
| 279 | OWLObjectMinCardinality minCard = (OWLObjectMinCardinality)exp; | 273 | } |
| 280 | if (minCard.getCardinality() == 1) | 274 | |
| 281 | exp1 = factory.getOWLObjectSomeValuesFrom(minCard.getProperty(), minCard.getFiller()); | 275 | /* |
| 282 | } | 276 | * randomly choose a class expression to represent this disjunction |
| 283 | 277 | */ | |
| 284 | if (!subCounter.containsKey(exp1) || (o = subCounter.get(exp1)) < occurrence) { | 278 | @SuppressWarnings("unused") |
| 285 | rep = exp; | 279 | private Set<OWLClassExpression> getDisjunctionApprox2(Set<OWLClassExpression> superClasses) { |
| 286 | occurrence = o; | 280 | if(superClasses.isEmpty() || superClasses.size() == 1) |
| 287 | } | 281 | return superClasses; |
| 288 | } | 282 | |
| 289 | 283 | int index = random.nextInt() % superClasses.size(); | |
| 290 | return Collections.singleton(rep); | 284 | if(index < 0) index += superClasses.size(); |
| 291 | } | 285 | |
| 292 | 286 | int i = 0; | |
| 293 | private int getOccurrence(OWLClassExpression exp) { | 287 | for(OWLClassExpression exp : superClasses) |
| 294 | if (!subCounter.containsKey(exp)) | 288 | if(i++ == index) |
| 295 | return 0; | 289 | return Collections.singleton(exp); |
| 296 | return subCounter.get(exp); | 290 | return null; |
| 297 | } | 291 | } |
| 298 | 292 | ||
| 299 | @SuppressWarnings("unused") | 293 | /* |
| 300 | private Set<OWLClassExpression> getDisjunctionApprox4(Set<OWLClassExpression> superClasses) { | 294 | * choose the one that appears least in the l.h.s. |
| 301 | if(superClasses.isEmpty() || superClasses.size() == 1) | 295 | */ |
| 302 | return superClasses; | 296 | @SuppressWarnings("unused") |
| 303 | 297 | private Set<OWLClassExpression> getDisjunctionApprox3(Set<OWLClassExpression> superClasses) { | |
| 304 | OWLClassExpression rep = null; | 298 | if(superClasses.isEmpty() || superClasses.size() == 1) |
| 305 | int occurrence = Integer.MAX_VALUE, o; | 299 | return superClasses; |
| 306 | for (OWLClassExpression exp: superClasses) { | 300 | |
| 307 | o = 0; | 301 | OWLClassExpression rep = null, exp1; |
| 308 | if (exp instanceof OWLObjectMinCardinality) { | 302 | int occurrence = Integer.MAX_VALUE, o; |
| 309 | OWLObjectMinCardinality minCard = (OWLObjectMinCardinality)exp; | 303 | for(OWLClassExpression exp : superClasses) { |
| 310 | if (minCard.getCardinality() == 1) { | 304 | o = 0; |
| 311 | o = getOccurrence((factory.getOWLObjectSomeValuesFrom(minCard.getProperty(), factory.getOWLThing()))); | 305 | exp1 = exp; |
| 312 | o += getOccurrence(minCard.getFiller()); | 306 | if(exp instanceof OWLObjectMinCardinality) { |
| 307 | OWLObjectMinCardinality minCard = (OWLObjectMinCardinality) exp; | ||
| 308 | if(minCard.getCardinality() == 1) | ||
| 309 | exp1 = factory.getOWLObjectSomeValuesFrom(minCard.getProperty(), minCard.getFiller()); | ||
| 310 | } | ||
| 311 | |||
| 312 | if(!subCounter.containsKey(exp1) || (o = subCounter.get(exp1)) < occurrence) { | ||
| 313 | rep = exp; | ||
| 314 | occurrence = o; | ||
| 315 | } | ||
| 316 | } | ||
| 317 | |||
| 318 | return Collections.singleton(rep); | ||
| 319 | } | ||
| 320 | |||
| 321 | private int getOccurrence(OWLClassExpression exp) { | ||
| 322 | if(!subCounter.containsKey(exp)) | ||
| 323 | return 0; | ||
| 324 | return subCounter.get(exp); | ||
| 325 | } | ||
| 326 | |||
| 327 | @SuppressWarnings("unused") | ||
| 328 | private Set<OWLClassExpression> getDisjunctionApprox4(Set<OWLClassExpression> superClasses) { | ||
| 329 | if(superClasses.isEmpty() || superClasses.size() == 1) | ||
| 330 | return superClasses; | ||
| 331 | |||
| 332 | OWLClassExpression rep = null; | ||
| 333 | int occurrence = Integer.MAX_VALUE, o; | ||
| 334 | for(OWLClassExpression exp : superClasses) { | ||
| 335 | o = 0; | ||
| 336 | if(exp instanceof OWLObjectMinCardinality) { | ||
| 337 | OWLObjectMinCardinality minCard = (OWLObjectMinCardinality) exp; | ||
| 338 | if(minCard.getCardinality() == 1) { | ||
| 339 | o = | ||
| 340 | getOccurrence((factory.getOWLObjectSomeValuesFrom(minCard.getProperty(), factory.getOWLThing()))); | ||
| 341 | o += getOccurrence(minCard.getFiller()); | ||
| 313 | // if (o < o1) o = o1; | 342 | // if (o < o1) o = o1; |
| 314 | } | 343 | } |
| 315 | } else | 344 | } |
| 316 | o = getOccurrence(exp); | 345 | else |
| 317 | 346 | o = getOccurrence(exp); | |
| 318 | if (o < occurrence || o == occurrence && !(rep instanceof OWLClass)) { | 347 | |
| 319 | rep = exp; | 348 | if(o < occurrence || o == occurrence && !(rep instanceof OWLClass)) { |
| 320 | occurrence = o; | 349 | rep = exp; |
| 321 | } | 350 | occurrence = o; |
| 322 | } | 351 | } |
| 323 | 352 | } | |
| 324 | return Collections.singleton(rep); | 353 | |
| 325 | } | 354 | return Collections.singleton(rep); |
| 326 | 355 | } | |
| 327 | private boolean simplifyABox() { | 356 | |
| 328 | boolean flag = false; | 357 | private boolean simplifyABox() { |
| 329 | Map<OWLClassExpression, OWLClass> complex2atomic= new HashMap<OWLClassExpression, OWLClass>(); | 358 | boolean flag = false; |
| 330 | 359 | Map<OWLClassExpression, OWLClass> complex2atomic = new HashMap<OWLClassExpression, OWLClass>(); | |
| 331 | OWLDatatype anyURI = factory.getOWLDatatype(IRI.create(Namespace.XSD_NS + "anyURI")); | 360 | |
| 332 | OWLObjectProperty sameAs = factory.getOWLObjectProperty(IRI.create(Namespace.EQUALITY)); | 361 | OWLDatatype anyURI = factory.getOWLDatatype(IRI.create(Namespace.XSD_NS + "anyURI")); |
| 333 | OWLObjectProperty differentFrom = factory.getOWLObjectProperty(IRI.create(Namespace.INEQUALITY)); | 362 | OWLObjectProperty sameAs = factory.getOWLObjectProperty(IRI.create(Namespace.EQUALITY)); |
| 334 | 363 | OWLObjectProperty differentFrom = factory.getOWLObjectProperty(IRI.create(Namespace.INEQUALITY)); | |
| 335 | for (OWLOntology imported: inputOntology.getImportsClosure()) | 364 | |
| 336 | for (OWLAxiom axiom: imported.getAxioms()) { | 365 | for(OWLOntology imported : inputOntology.getImportsClosure()) |
| 337 | if (axiom instanceof OWLClassAssertionAxiom) { | 366 | for(OWLAxiom axiom : imported.getAxioms()) { |
| 338 | flag = true; | 367 | if(axiom instanceof OWLClassAssertionAxiom) { |
| 339 | OWLClassAssertionAxiom assertion = (OWLClassAssertionAxiom)axiom; | 368 | flag = true; |
| 340 | OWLClassExpression clsExp = assertion.getClassExpression(); | 369 | OWLClassAssertionAxiom assertion = (OWLClassAssertionAxiom) axiom; |
| 341 | OWLClass cls; | 370 | OWLClassExpression clsExp = assertion.getClassExpression(); |
| 342 | if (clsExp instanceof OWLClass) { | 371 | OWLClass cls; |
| 343 | if (((OWLClass) clsExp).toStringID().startsWith("owl:")) | 372 | if(clsExp instanceof OWLClass) { |
| 344 | manager.addAxiom(tBox, axiom); | 373 | if(((OWLClass) clsExp).toStringID().startsWith("owl:")) |
| 345 | else manager.addAxiom(aBox, axiom); | 374 | manager.addAxiom(tBox, axiom); |
| 346 | } | 375 | else manager.addAxiom(aBox, axiom); |
| 347 | else { | 376 | } |
| 348 | if ((cls = complex2atomic.get(clsExp)) == null) { | 377 | else { |
| 349 | complex2atomic.put(clsExp, cls = getNewConcept(tBox, rlCounter++)); | 378 | if((cls = complex2atomic.get(clsExp)) == null) { |
| 350 | manager.addAxiom(tBox, factory.getOWLSubClassOfAxiom(cls, clsExp)); | 379 | complex2atomic.put(clsExp, cls = getNewConcept(tBox, rlCounter++)); |
| 351 | } | 380 | manager.addAxiom(tBox, factory.getOWLSubClassOfAxiom(cls, clsExp)); |
| 352 | manager.addAxiom(aBox, factory.getOWLClassAssertionAxiom(cls, assertion.getIndividual())); | 381 | } |
| 353 | } | 382 | manager.addAxiom(aBox, factory.getOWLClassAssertionAxiom(cls, assertion.getIndividual())); |
| 354 | } | 383 | } |
| 355 | else if (axiom instanceof OWLObjectPropertyAssertionAxiom || axiom instanceof OWLDataPropertyAssertionAxiom || axiom instanceof OWLAnnotationAssertionAxiom) { | 384 | } |
| 356 | if(axiom.getDataPropertiesInSignature().contains(anyURI)) continue; | 385 | else if(axiom instanceof OWLObjectPropertyAssertionAxiom || axiom instanceof OWLDataPropertyAssertionAxiom || axiom instanceof OWLAnnotationAssertionAxiom) { |
| 357 | flag = true; | 386 | if(axiom.getDataPropertiesInSignature().contains(anyURI)) continue; |
| 358 | manager.addAxiom(aBox, axiom); | 387 | flag = true; |
| 359 | } | 388 | manager.addAxiom(aBox, axiom); |
| 360 | else if (axiom instanceof OWLSameIndividualAxiom) { | 389 | } |
| 361 | OWLIndividual firstIndividual = null, previousIndividual = null, lastIndividual = null; | 390 | else if(axiom instanceof OWLSameIndividualAxiom) { |
| 362 | for (OWLIndividual next: ((OWLSameIndividualAxiom) axiom).getIndividuals()) { | 391 | OWLIndividual firstIndividual = null, previousIndividual = null, lastIndividual = null; |
| 363 | if(firstIndividual == null) firstIndividual = previousIndividual = next; | 392 | for(OWLIndividual next : ((OWLSameIndividualAxiom) axiom).getIndividuals()) { |
| 364 | else | 393 | if(firstIndividual == null) firstIndividual = previousIndividual = next; |
| 365 | manager.addAxiom(aBox, factory.getOWLObjectPropertyAssertionAxiom(sameAs, previousIndividual, next)); | 394 | else |
| 366 | previousIndividual = lastIndividual = next; | 395 | manager.addAxiom(aBox, factory.getOWLObjectPropertyAssertionAxiom(sameAs, previousIndividual, next)); |
| 367 | } | 396 | previousIndividual = lastIndividual = next; |
| 368 | manager.addAxiom(aBox, factory.getOWLObjectPropertyAssertionAxiom(sameAs, lastIndividual, firstIndividual)); | 397 | } |
| 369 | } | 398 | manager.addAxiom(aBox, factory.getOWLObjectPropertyAssertionAxiom(sameAs, lastIndividual, firstIndividual)); |
| 370 | else if (axiom instanceof OWLDifferentIndividualsAxiom) { | 399 | } |
| 371 | int index1 = 0, index2; | 400 | else if(axiom instanceof OWLDifferentIndividualsAxiom) { |
| 372 | for (OWLIndividual individual1: ((OWLDifferentIndividualsAxiom) axiom).getIndividuals()) { | 401 | int index1 = 0, index2; |
| 373 | ++index1; | 402 | for(OWLIndividual individual1 : ((OWLDifferentIndividualsAxiom) axiom).getIndividuals()) { |
| 374 | index2 = 0; | 403 | ++index1; |
| 375 | for (OWLIndividual individual2: ((OWLDifferentIndividualsAxiom) axiom).getIndividuals()) { | 404 | index2 = 0; |
| 376 | if (index2++ < index1) { | 405 | for(OWLIndividual individual2 : ((OWLDifferentIndividualsAxiom) axiom).getIndividuals()) { |
| 377 | manager.addAxiom(aBox, factory.getOWLObjectPropertyAssertionAxiom(differentFrom, individual1, individual2)); | 406 | if(index2++ < index1) { |
| 378 | } else break; | 407 | manager.addAxiom(aBox, factory.getOWLObjectPropertyAssertionAxiom(differentFrom, individual1, individual2)); |
| 379 | } | 408 | } |
| 380 | } | 409 | else break; |
| 381 | } else | 410 | } |
| 382 | manager.addAxiom(tBox, axiom); | 411 | } |
| 383 | } | 412 | } |
| 384 | 413 | else | |
| 385 | return flag; | 414 | manager.addAxiom(tBox, axiom); |
| 386 | } | 415 | } |
| 387 | 416 | ||
| 388 | private void filter() { | 417 | return flag; |
| 389 | OWL2RLProfile profile = new OWL2RLProfile(); | 418 | } |
| 390 | OWLProfileReport report = profile.checkOntology(tBox); | 419 | |
| 391 | Set<OWLAxiom> rlAxioms = tBox.getAxioms(); | 420 | private void filter() { |
| 392 | OWLAxiom axiom; | 421 | OWL2RLProfile profile = new OWL2RLProfile(); |
| 393 | 422 | OWLProfileReport report = profile.checkOntology(tBox); | |
| 394 | for (OWLProfileViolation violation: report.getViolations()) { | 423 | Set<OWLAxiom> rlAxioms = tBox.getAxioms(); |
| 395 | manager.addAxiom(restOntology, axiom = violation.getAxiom()); | 424 | OWLAxiom axiom; |
| 396 | rlAxioms.remove(axiom); | 425 | |
| 397 | } | 426 | for(OWLProfileViolation violation : report.getViolations()) { |
| 398 | 427 | manager.addAxiom(restOntology, axiom = violation.getAxiom()); | |
| 399 | for (Iterator<OWLAxiom> iter = rlAxioms.iterator(); iter.hasNext(); ) | 428 | rlAxioms.remove(axiom); |
| 400 | addAxiom2output(iter.next(), null); | 429 | } |
| 401 | } | 430 | |
| 402 | 431 | for(Iterator<OWLAxiom> iter = rlAxioms.iterator(); iter.hasNext(); ) | |
| 403 | private void clausify() { | 432 | addAxiom2output(iter.next(), null); |
| 404 | Configuration conf = new Configuration(); | 433 | } |
| 405 | OWLClausification clausifier = new OWLClausification(conf); | 434 | |
| 406 | dlOntology = (DLOntology)clausifier.preprocessAndClausify(restOntology, null)[1]; | 435 | private void clausify() { |
| 407 | clausifier = null; | 436 | Configuration conf = new Configuration(); |
| 408 | } | 437 | OWLClausification clausifier = new OWLClausification(conf); |
| 409 | 438 | dlOntology = (DLOntology) clausifier.preprocessAndClausify(restOntology, null)[1]; | |
| 410 | protected void addAxiom2output(OWLAxiom axiom, OWLAxiom correspondingAxiom) { | 439 | clausifier = null; |
| 411 | manager.addAxiom(outputOntology, axiom); | 440 | } |
| 412 | if (correspondingAxiom != null) | 441 | |
| 413 | correspondence.put(axiom, correspondingAxiom); | 442 | protected void addAxiom2output(OWLAxiom axiom, OWLAxiom correspondingAxiom) { |
| 414 | } | 443 | manager.addAxiom(outputOntology, axiom); |
| 415 | 444 | if(correspondingAxiom != null) | |
| 416 | private OWLClassExpression transform(OWLClassExpression exp, Set<OWLAxiom> addedAxioms) { | 445 | correspondence.put(axiom, correspondingAxiom); |
| 417 | if (exp instanceof OWLClass) | 446 | } |
| 418 | return exp; | 447 | |
| 419 | 448 | private OWLClassExpression transform(OWLClassExpression exp, Set<OWLAxiom> addedAxioms) { | |
| 420 | if (exp instanceof OWLObjectHasValue) | 449 | if(exp instanceof OWLClass) |
| 421 | return exp; | 450 | return exp; |
| 422 | 451 | ||
| 423 | if (exp instanceof OWLObjectSomeValuesFrom) { | 452 | if(exp instanceof OWLObjectHasValue) |
| 424 | OWLObjectSomeValuesFrom someValueExp = (OWLObjectSomeValuesFrom)exp; | 453 | return exp; |
| 425 | 454 | ||
| 426 | OWLClassExpression tExp = someValueExp.getFiller(); | 455 | if(exp instanceof OWLObjectSomeValuesFrom) { |
| 427 | if (tExp.equals(factory.getOWLThing())) | 456 | OWLObjectSomeValuesFrom someValueExp = (OWLObjectSomeValuesFrom) exp; |
| 428 | exp = factory.getOWLObjectMinCardinality(1, someValueExp.getProperty()); | 457 | |
| 429 | else | 458 | OWLClassExpression tExp = someValueExp.getFiller(); |
| 430 | exp = factory.getOWLObjectMinCardinality(1, someValueExp.getProperty(), someValueExp.getFiller()); | 459 | if(tExp.equals(factory.getOWLThing())) |
| 431 | } | 460 | exp = factory.getOWLObjectMinCardinality(1, someValueExp.getProperty()); |
| 432 | 461 | else | |
| 433 | if (exp instanceof OWLObjectMinCardinality) { | 462 | exp = factory.getOWLObjectMinCardinality(1, someValueExp.getProperty(), someValueExp.getFiller()); |
| 434 | OWLObjectMinCardinality minExp = (OWLObjectMinCardinality)exp; | 463 | } |
| 435 | OWLObjectPropertyExpression r; | 464 | |
| 436 | 465 | if(exp instanceof OWLObjectMinCardinality) { | |
| 437 | if (minExp.getFiller().equals(factory.getOWLThing())) { | 466 | OWLObjectMinCardinality minExp = (OWLObjectMinCardinality) exp; |
| 438 | r = minExp.getProperty(); | 467 | OWLObjectPropertyExpression r; |
| 439 | } | 468 | |
| 440 | //TODO to be restored ... | 469 | if(minExp.getFiller().equals(factory.getOWLThing())) { |
| 441 | //else if ((r = exists2role.get(someValueExp)) == null) { | 470 | r = minExp.getProperty(); |
| 442 | // deal with r' \subseteq r & range(r') \subseteq C | 471 | } |
| 443 | else { | 472 | //TODO to be restored ... |
| 444 | r = getNewRole(outputOntology, rlCounter); | 473 | //else if ((r = exists2role.get(someValueExp)) == null) { |
| 445 | addedAxioms.add(factory.getOWLSubObjectPropertyOfAxiom(r, minExp.getProperty())); | 474 | // deal with r' \subseteq r & range(r') \subseteq C |
| 446 | OWLClassExpression tExp = minExp.getFiller(); | 475 | else { |
| 447 | if (!(tExp instanceof OWLObjectComplementOf)) { | 476 | r = getNewRole(outputOntology, rlCounter); |
| 448 | if (tExp.equals(factory.getOWLThing())); | 477 | addedAxioms.add(factory.getOWLSubObjectPropertyOfAxiom(r, minExp.getProperty())); |
| 449 | else | 478 | OWLClassExpression tExp = minExp.getFiller(); |
| 450 | addedAxioms.add(factory.getOWLObjectPropertyRangeAxiom(r, tExp)); | 479 | if(!(tExp instanceof OWLObjectComplementOf)) { |
| 451 | } | 480 | if(tExp.equals(factory.getOWLThing())) ; |
| 452 | else if (botStrategy != BottomStrategy.TOREMOVE) { | 481 | else |
| 453 | OWLClass cls = (OWLClass) tExp.getComplementNNF(); | 482 | addedAxioms.add(factory.getOWLObjectPropertyRangeAxiom(r, tExp)); |
| 454 | OWLClass neg; | 483 | } |
| 455 | if ((neg = atomic2negation.get(cls)) == null) { | 484 | else if(botStrategy != BottomStrategy.TOREMOVE) { |
| 456 | neg = getNewConcept(outputOntology, rlCounter); | 485 | OWLClass cls = (OWLClass) tExp.getComplementNNF(); |
| 457 | addedAxioms.add(factory.getOWLDisjointClassesAxiom(neg, cls)); | 486 | OWLClass neg; |
| 458 | atomic2negation.put(cls, neg); | 487 | if((neg = atomic2negation.get(cls)) == null) { |
| 459 | } | 488 | neg = getNewConcept(outputOntology, rlCounter); |
| 460 | addedAxioms.add(factory.getOWLObjectPropertyRangeAxiom(r, neg)); | 489 | addedAxioms.add(factory.getOWLDisjointClassesAxiom(neg, cls)); |
| 461 | } | 490 | atomic2negation.put(cls, neg); |
| 491 | } | ||
| 492 | addedAxioms.add(factory.getOWLObjectPropertyRangeAxiom(r, neg)); | ||
| 493 | } | ||
| 462 | // exists2role.put(someValueExp, (OWLObjectProperty) r); | 494 | // exists2role.put(someValueExp, (OWLObjectProperty) r); |
| 463 | } | 495 | } |
| 464 | 496 | ||
| 465 | // deal with r'(x,c) | 497 | // deal with r'(x,c) |
| 466 | Set<OWLClassExpression> ret = new HashSet<OWLClassExpression>(); | 498 | Set<OWLClassExpression> ret = new HashSet<OWLClassExpression>(); |
| 467 | int num = minExp.getCardinality(); | 499 | int num = minExp.getCardinality(); |
| 468 | 500 | ||
| 469 | Set<OWLNamedIndividual> cs = new HashSet<OWLNamedIndividual>(); | 501 | Set<OWLNamedIndividual> cs = new HashSet<OWLNamedIndividual>(); |
| 470 | OWLNamedIndividual c; | 502 | OWLNamedIndividual c; |
| 471 | for (int i = 0; i < num; ++i) { | 503 | for(int i = 0; i < num; ++i) { |
| 472 | c = getNewIndividual(outputOntology, rlCounter++); | 504 | c = getNewIndividual(outputOntology, rlCounter++); |
| 473 | ret.add(factory.getOWLObjectHasValue(r, c)); | 505 | ret.add(factory.getOWLObjectHasValue(r, c)); |
| 474 | cs.add(c); | 506 | cs.add(c); |
| 475 | } | 507 | } |
| 476 | 508 | ||
| 477 | if (botStrategy != BottomStrategy.TOREMOVE && cs.size() > 1) { | 509 | if(botStrategy != BottomStrategy.TOREMOVE && cs.size() > 1) { |
| 478 | addedAxioms.add(factory.getOWLDifferentIndividualsAxiom(cs)); | 510 | addedAxioms.add(factory.getOWLDifferentIndividualsAxiom(cs)); |
| 479 | } | 511 | } |
| 480 | 512 | ||
| 481 | return OWLHelper.getSimplifiedConjunction(factory, ret); | 513 | return OWLHelper.getSimplifiedConjunction(factory, ret); |
| 482 | } | 514 | } |
| 483 | 515 | ||
| 484 | if (exp instanceof OWLObjectMaxCardinality) { | 516 | if(exp instanceof OWLObjectMaxCardinality) { |
| 485 | OWLObjectMaxCardinality maxExp = (OWLObjectMaxCardinality)exp; | 517 | OWLObjectMaxCardinality maxExp = (OWLObjectMaxCardinality) exp; |
| 486 | OWLClassExpression tExp = maxExp.getFiller(); | 518 | OWLClassExpression tExp = maxExp.getFiller(); |
| 487 | int card = maxExp.getCardinality() >= 1 ? 1 : 0; | 519 | int card = maxExp.getCardinality() >= 1 ? 1 : 0; |
| 488 | if (!(tExp instanceof OWLObjectComplementOf)) | 520 | if(!(tExp instanceof OWLObjectComplementOf)) |
| 489 | return factory.getOWLObjectMaxCardinality(card, maxExp.getProperty(), tExp); | 521 | return factory.getOWLObjectMaxCardinality(card, maxExp.getProperty(), tExp); |
| 490 | else { | 522 | else { |
| 491 | Utility.logDebug("oh, to be tested ... "); | 523 | Utility.logDebug("oh, to be tested ... "); |
| 492 | OWLClassExpression tExp1 = factory.getOWLObjectAllValuesFrom(maxExp.getProperty(), tExp.getComplementNNF()); | 524 | OWLClassExpression tExp1 = |
| 493 | if (card == 0) | 525 | factory.getOWLObjectAllValuesFrom(maxExp.getProperty(), tExp.getComplementNNF()); |
| 494 | return tExp1; | 526 | if(card == 0) |
| 495 | else { | 527 | return tExp1; |
| 496 | OWLClassExpression tExp2 = factory.getOWLObjectMaxCardinality(1, maxExp.getProperty()); | 528 | else { |
| 497 | return factory.getOWLObjectIntersectionOf(tExp1, tExp2); | 529 | OWLClassExpression tExp2 = factory.getOWLObjectMaxCardinality(1, maxExp.getProperty()); |
| 498 | } | 530 | return factory.getOWLObjectIntersectionOf(tExp1, tExp2); |
| 499 | } | 531 | } |
| 500 | } | 532 | } |
| 501 | 533 | } | |
| 502 | if (exp instanceof OWLObjectAllValuesFrom) | 534 | |
| 503 | return exp; | 535 | if(exp instanceof OWLObjectAllValuesFrom) |
| 504 | 536 | return exp; | |
| 505 | if (exp instanceof OWLObjectOneOf) | 537 | |
| 506 | if (((OWLObjectOneOf) exp).getIndividuals().size() == 1) | 538 | if(exp instanceof OWLObjectOneOf) |
| 507 | return exp; | 539 | if(((OWLObjectOneOf) exp).getIndividuals().size() == 1) |
| 508 | else | 540 | return exp; |
| 509 | return null; | 541 | else |
| 510 | 542 | return null; | |
| 511 | if (exp instanceof OWLDataHasValue) | 543 | |
| 512 | return exp; | 544 | if(exp instanceof OWLDataHasValue) |
| 513 | 545 | return exp; | |
| 514 | //TODO overapproximation - dealing with OWLDataMinCardinality | 546 | |
| 515 | 547 | //TODO overapproximation - dealing with OWLDataMinCardinality | |
| 516 | if (exp instanceof OWLDataSomeValuesFrom) { | 548 | |
| 517 | return exp; | 549 | if(exp instanceof OWLDataSomeValuesFrom) { |
| 518 | } | 550 | return exp; |
| 519 | 551 | } | |
| 520 | if (exp instanceof OWLDataMinCardinality) { | 552 | |
| 521 | return exp; | 553 | if(exp instanceof OWLDataMinCardinality) { |
| 522 | } | 554 | return exp; |
| 523 | 555 | } | |
| 524 | if (exp instanceof OWLDataMaxCardinality) { | 556 | |
| 525 | return exp; | 557 | if(exp instanceof OWLDataMaxCardinality) { |
| 526 | } | 558 | return exp; |
| 527 | 559 | } | |
| 528 | 560 | ||
| 529 | Set<OWLClassExpression> exps = exp.asConjunctSet(); | 561 | |
| 530 | if (exps.size() == 1 && exps.iterator().next() == exp) { | 562 | Set<OWLClassExpression> exps = exp.asConjunctSet(); |
| 531 | Utility.logError(exp, "error in transform of Ontology~~~~"); | 563 | if(exps.size() == 1 && exps.iterator().next() == exp) { |
| 532 | } | 564 | Utility.logError(exp, "error in transform of Ontology~~~~"); |
| 533 | Set<OWLClassExpression> nexps = new HashSet<OWLClassExpression>(); | 565 | } |
| 534 | OWLClassExpression ne; | 566 | Set<OWLClassExpression> nexps = new HashSet<OWLClassExpression>(); |
| 535 | boolean changes = false; | 567 | OWLClassExpression ne; |
| 536 | for (OWLClassExpression e: exps) { | 568 | boolean changes = false; |
| 537 | ne = transform(e, addedAxioms); | 569 | for(OWLClassExpression e : exps) { |
| 538 | if (ne != e) changes = true; | 570 | ne = transform(e, addedAxioms); |
| 539 | nexps.add(ne); | 571 | if(ne != e) changes = true; |
| 540 | } | 572 | nexps.add(ne); |
| 541 | if (changes) | 573 | } |
| 542 | return OWLHelper.getSimplifiedConjunction(factory, nexps); | 574 | if(changes) |
| 543 | else | 575 | return OWLHelper.getSimplifiedConjunction(factory, nexps); |
| 544 | return exp; | 576 | else |
| 545 | } | 577 | return exp; |
| 546 | 578 | } | |
| 547 | protected OWLNamedIndividual getNewIndividual(OWLOntology onto, int number) { | 579 | |
| 548 | OWLOntologyManager manager = onto.getOWLOntologyManager(); | 580 | protected OWLNamedIndividual getNewIndividual(OWLOntology onto, int number) { |
| 549 | OWLDataFactory factory = manager.getOWLDataFactory(); | 581 | OWLOntologyManager manager = onto.getOWLOntologyManager(); |
| 550 | OWLNamedIndividual newIndividual = factory.getOWLNamedIndividual(IRI.create(Namespace.PAGODA_ANONY + "NI" + number)); | 582 | OWLDataFactory factory = manager.getOWLDataFactory(); |
| 551 | manager.addAxiom(onto, factory.getOWLDeclarationAxiom(newIndividual)); | 583 | OWLNamedIndividual newIndividual = |
| 552 | return newIndividual; | 584 | factory.getOWLNamedIndividual(IRI.create(Namespace.PAGODA_ANONY + "NI" + number)); |
| 553 | } | 585 | manager.addAxiom(onto, factory.getOWLDeclarationAxiom(newIndividual)); |
| 554 | 586 | return newIndividual; | |
| 555 | protected OWLObjectProperty getNewRole(OWLOntology onto, int number) { | 587 | } |
| 556 | OWLOntologyManager manager = onto.getOWLOntologyManager(); | 588 | |
| 557 | OWLDataFactory factory = manager.getOWLDataFactory(); | 589 | protected OWLObjectProperty getNewRole(OWLOntology onto, int number) { |
| 558 | OWLObjectProperty newProperty = factory.getOWLObjectProperty(IRI.create(Namespace.PAGODA_AUX + "NR" + number)); | 590 | OWLOntologyManager manager = onto.getOWLOntologyManager(); |
| 559 | manager.addAxiom(onto, factory.getOWLDeclarationAxiom(newProperty)); | 591 | OWLDataFactory factory = manager.getOWLDataFactory(); |
| 560 | return newProperty; | 592 | OWLObjectProperty newProperty = factory.getOWLObjectProperty(IRI.create(Namespace.PAGODA_AUX + "NR" + number)); |
| 561 | } | 593 | manager.addAxiom(onto, factory.getOWLDeclarationAxiom(newProperty)); |
| 562 | 594 | return newProperty; | |
| 563 | private OWLClass getNewConcept(OWLOntology onto, int number) { | 595 | } |
| 564 | OWLOntologyManager manager = onto.getOWLOntologyManager(); | 596 | |
| 565 | OWLDataFactory factory = manager.getOWLDataFactory(); | 597 | private OWLClass getNewConcept(OWLOntology onto, int number) { |
| 566 | OWLClass newClass = factory.getOWLClass(IRI.create(Namespace.PAGODA_AUX + "NC" + number)); | 598 | OWLOntologyManager manager = onto.getOWLOntologyManager(); |
| 567 | manager.addAxiom(onto, factory.getOWLDeclarationAxiom(newClass)); | 599 | OWLDataFactory factory = manager.getOWLDataFactory(); |
| 568 | return newClass; | 600 | OWLClass newClass = factory.getOWLClass(IRI.create(Namespace.PAGODA_AUX + "NC" + number)); |
| 569 | } | 601 | manager.addAxiom(onto, factory.getOWLDeclarationAxiom(newClass)); |
| 570 | 602 | return newClass; | |
| 571 | public OWLOntologyManager getOWLOntologyManager() { | 603 | } |
| 572 | return inputOntology.getOWLOntologyManager(); | 604 | |
| 573 | } | 605 | private enum BottomStrategy {TOREMOVE, NULLARY, UNARY} |
| 574 | |||
| 575 | public String getOntologyIRI() { | ||
| 576 | return ontologyIRI; | ||
| 577 | } | ||
| 578 | |||
| 579 | public OWLOntology getOutputOntology() { | ||
| 580 | return outputOntology; | ||
| 581 | } | ||
| 582 | |||
| 583 | @Override | ||
| 584 | public String getOutputPath() { | ||
| 585 | return outputPath; | ||
| 586 | } | ||
| 587 | |||
| 588 | @Override | ||
| 589 | public String getDirectory() { | ||
| 590 | return outputPath.substring(0, outputPath.lastIndexOf(Utility.FILE_SEPARATOR)); | ||
| 591 | } | ||
| 592 | |||
| 593 | public void setCorrespondenceFileLoc(String path) { | ||
| 594 | corrFileName = path; | ||
| 595 | } | ||
| 596 | |||
| 597 | private enum BottomStrategy { TOREMOVE, NULLARY, UNARY } | ||
| 598 | } | 606 | } |
| 599 | 607 | ||
