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diff --git a/test/uk/ac/ox/cs/hermit/JAIR_HermiT.java b/test/uk/ac/ox/cs/hermit/JAIR_HermiT.java
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1package uk.ac.ox.cs.hermit;
2
3import org.junit.Test;
4import uk.ac.ox.cs.pagoda.util.TestUtil;
5
6public class JAIR_HermiT {
7
8 @Test
9 public void lubm1() throws Exception {
10 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
11 String[] args = new String[] {
12 TestUtil.combinePaths(ontoDir, "lubm/univ-bench.owl"),
13 TestUtil.combinePaths(ontoDir, "lubm/data/lubm1_owl"),
14 TestUtil.combinePaths(ontoDir, "lubm/queries/answersCorrectness.sparql")
15// , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/lubm1/hermit"
16 };
17 HermitQueryReasoner.main(args);
18 }
19
20 @Test
21 public void lubm1_rolledUp() throws Exception {
22 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
23 String[] args = new String[] {
24 "/home/yzhou/backup/20141212/univ-bench-queries.owl",
25 TestUtil.combinePaths(ontoDir, "lubm/data/lubm1_owl"),
26 TestUtil.combinePaths(ontoDir, "lubm/queries/atomic_lubm.sparql")
27// , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/lubm1/hermit_rolledUp"
28 };
29 HermitQueryReasoner.main(args);
30 }
31
32 @Test
33 public void uobm1() throws Exception {
34 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
35 String[] args = new String[] {
36 TestUtil.combinePaths(ontoDir, "uobm/univ-bench-dl.owl"),
37 TestUtil.combinePaths(ontoDir, "uobm/data/uobm1_owl_withDeclaration"),
38 TestUtil.combinePaths(ontoDir, "uobm/queries/standard.sparql")
39// , "hermit_uobm1.out"
40// , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/uobm1/hermit"
41 };
42 HermitQueryReasoner.main(args);
43 }
44
45 @Test
46 public void uobm1_rolledUp() throws Exception {
47 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
48 String[] args = new String[] {
49 "/home/yzhou/backup/20141212/univ-bench-dl-queries.owl",
50 TestUtil.combinePaths(ontoDir, "uobm/data/uobm1_owl_withDeclaration"),
51 TestUtil.combinePaths(ontoDir, "uobm/queries/atomic_uobm.sparql")
52 , "hermit_uobm1_rolledUp.out"
53// , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/uobm1/hermit_rolledUp"
54 };
55 HermitQueryReasoner.main(args);
56 }
57
58 @Test
59 public void fly_rolledUp() throws Exception {
60 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
61 HermitQueryReasoner.main(
62 TestUtil.combinePaths(ontoDir, "fly/fly-all-in-one_rolledUp.owl"),
63// TestUtil.combinePaths(ontoDir, "fly/fly_anatomy_XP_with_GJ_FC_individuals.owl",
64 null,
65 TestUtil.combinePaths(ontoDir, "fly/queries/fly_atomic.sparql")
66 , "hermit_fly.out"
67 );
68 }
69
70 @Test
71 public void npd() throws Exception {
72 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
73 HermitQueryReasoner.main(
74 TestUtil.combinePaths(ontoDir, "npd/npd-all-minus-datatype.owl"),
75 TestUtil.combinePaths(ontoDir, "npd/data/npd-data-dump-minus-datatype-new.ttl"),
76 TestUtil.combinePaths(ontoDir, "npd/queries/atomic_ground.sparql")
77 , "hermit_npd.out"
78// , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/npd/hermit"
79 );
80 }
81
82 @Test
83 public void dbpedia() throws Exception {
84 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
85 HermitQueryReasoner.main(
86 TestUtil.combinePaths(ontoDir, "dbpedia/integratedOntology-all-in-one-minus-datatype.owl"),
87 TestUtil.combinePaths(ontoDir, "dbpedia/data/dbpedia-minus-datatype-new.ttl"),
88 TestUtil.combinePaths(ontoDir, "dbpedia/queries/atomic_ground.sparql")
89 , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/dbpedia/hermit"
90 );
91 }
92
93 @Test
94 public void reactome() throws Exception {
95 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
96 HermitQueryReasoner.main(
97 TestUtil.combinePaths(ontoDir, "bio2rdf/reactome/biopax-level3-processed.owl"),
98 TestUtil.combinePaths(ontoDir, "bio2rdf/reactome/graph sampling/reactome_sample_10.ttl"),
99 TestUtil.combinePaths(ontoDir, "bio2rdf/reactome/queries/atomic_ground.sparql")
100 , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/reactome/hermit_10p"
101 );
102 }
103
104 @Test
105 public void chembl() throws Exception {
106 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
107 HermitQueryReasoner.main(
108 TestUtil.combinePaths(ontoDir, "bio2rdf/chembl/cco-noDPR.ttl"),
109// null,
110 TestUtil.combinePaths(ontoDir, "bio2rdf/chembl/graph sampling/sample_1.nt"),
111 TestUtil.combinePaths(ontoDir, "bio2rdf/chembl/queries/atomic_ground.sparql")
112 , "hermit_chembl.out"
113// , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/chembl/hermit_1p"
114 );
115 }
116
117 @Test
118 public void uniprot() throws Exception {
119 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
120 HermitQueryReasoner.main(
121 TestUtil.combinePaths(ontoDir, "bio2rdf/uniprot/core-sat.owl"),
122 TestUtil.combinePaths(ontoDir, "bio2rdf/uniprot/graph sampling/sample_1.nt"),
123 TestUtil.combinePaths(ontoDir, "bio2rdf/uniprot/queries/atomic_ground.sparql")
124 , "hermit_uniprot.out"
125// , "/home/yzhou/java-workspace/answersCorrectness-share/results_new/uniprot/hermit_1p"
126 );
127 }
128
129}
generated by cgit v1.2.3 (git 2.25.1) at 2025-11-06 19:14:29 +0000