1 files changed, 120 insertions, 0 deletions

diff --git a/test/uk/ac/ox/cs/hermit/JAIR_HermiT.java b/test/uk/ac/ox/cs/hermit/JAIR_HermiT.java
new file mode 100644
index 0000000..2fc478d
--- /dev/null
+++ b/test/uk/ac/ox/cs/hermit/JAIR_HermiT.java
@@ -0,0 +1,120 @@
+package uk.ac.ox.cs.hermit;
+
+import org.junit.Test;
+
+import uk.ac.ox.cs.pagoda.tester.PagodaTester;
+
+public class JAIR_HermiT {
+
+        @Test
+        public void lubm1() throws Exception {
+                String[] args = new String[] {
+                                PagodaTester.onto_dir + "lubm/univ-bench.owl",
+                                PagodaTester.onto_dir + "lubm/data/lubm1_owl",
+                                PagodaTester.onto_dir + "lubm/queries/test.sparql"
+//                              , "/home/yzhou/java-workspace/test-share/results_new/lubm1/hermit"
+                };
+                HermitQueryReasoner.main(args);
+        }
+        
+        @Test
+        public void lubm1_rolledUp() throws Exception {
+                String[] args = new String[] {
+                                "/home/yzhou/backup/20141212/univ-bench-queries.owl",
+                                PagodaTester.onto_dir + "lubm/data/lubm1_owl",
+                                PagodaTester.onto_dir + "lubm/queries/atomic_lubm.sparql" 
+//                              , "/home/yzhou/java-workspace/test-share/results_new/lubm1/hermit_rolledUp"
+                };
+                HermitQueryReasoner.main(args);
+        }
+        
+        @Test
+        public void uobm1() throws Exception {
+                String[] args = new String[] {
+                                PagodaTester.onto_dir + "uobm/univ-bench-dl.owl",
+                                PagodaTester.onto_dir + "uobm/data/uobm1_owl_withDeclaration",
+                                PagodaTester.onto_dir + "uobm/queries/standard.sparql" 
+//                              , "hermit_uobm1.out"
+//                              , "/home/yzhou/java-workspace/test-share/results_new/uobm1/hermit"
+                };
+                HermitQueryReasoner.main(args);
+        }
+        
+        @Test
+        public void uobm1_rolledUp() throws Exception {
+                String[] args = new String[] {
+                                "/home/yzhou/backup/20141212/univ-bench-dl-queries.owl",
+                                PagodaTester.onto_dir + "uobm/data/uobm1_owl_withDeclaration",
+                                PagodaTester.onto_dir + "uobm/queries/atomic_uobm.sparql" 
+                                , "hermit_uobm1_rolledUp.out"
+//                              , "/home/yzhou/java-workspace/test-share/results_new/uobm1/hermit_rolledUp"
+                };
+                HermitQueryReasoner.main(args);
+        }
+        
+        @Test
+        public void fly_rolledUp() throws Exception {
+                HermitQueryReasoner.main(
+                                PagodaTester.onto_dir + "fly/fly-all-in-one_rolledUp.owl",
+//                              PagodaTester.onto_dir + "fly/fly_anatomy_XP_with_GJ_FC_individuals.owl",
+                                null, 
+                                PagodaTester.onto_dir + "fly/queries/fly_atomic.sparql" 
+                                , "hermit_fly.out"
+                );
+        }
+        
+        @Test 
+        public void npd() throws Exception {
+                HermitQueryReasoner.main(
+                                PagodaTester.onto_dir + "npd/npd-all-minus-datatype.owl", 
+                                PagodaTester.onto_dir + "npd/data/npd-data-dump-minus-datatype-new.ttl", 
+                                PagodaTester.onto_dir + "npd/queries/atomic_ground.sparql" 
+                                , "hermit_npd.out"
+//                              , "/home/yzhou/java-workspace/test-share/results_new/npd/hermit"
+                ); 
+        }
+
+        @Test 
+        public void dbpedia() throws Exception {
+                HermitQueryReasoner.main(
+                                PagodaTester.onto_dir + "dbpedia/integratedOntology-all-in-one-minus-datatype.owl", 
+                                PagodaTester.onto_dir + "dbpedia/data/dbpedia-minus-datatype-new.ttl",
+                                PagodaTester.onto_dir + "dbpedia/queries/atomic_ground.sparql"
+                                , "/home/yzhou/java-workspace/test-share/results_new/dbpedia/hermit"
+                );
+        }
+
+        @Test 
+        public void reactome() throws Exception {
+                HermitQueryReasoner.main(
+                                PagodaTester.onto_dir + "bio2rdf/reactome/biopax-level3-processed.owl", 
+                                PagodaTester.onto_dir + "bio2rdf/reactome/graph sampling/reactome_sample_10.ttl", 
+                                PagodaTester.onto_dir + "bio2rdf/reactome/queries/atomic_ground.sparql"
+                                , "/home/yzhou/java-workspace/test-share/results_new/reactome/hermit_10p"
+                ); 
+        }
+
+        @Test 
+        public void chembl() throws Exception {
+                HermitQueryReasoner.main(
+                                PagodaTester.onto_dir + "bio2rdf/chembl/cco-noDPR.ttl", 
+//                              null,
+                                PagodaTester.onto_dir + "bio2rdf/chembl/graph sampling/sample_1.nt", 
+                                PagodaTester.onto_dir + "bio2rdf/chembl/queries/atomic_ground.sparql"
+                                , "hermit_chembl.out"
+//                              , "/home/yzhou/java-workspace/test-share/results_new/chembl/hermit_1p"
+                ); 
+        }
+
+        @Test 
+        public void uniprot() throws Exception {
+                HermitQueryReasoner.main(
+                                PagodaTester.onto_dir + "bio2rdf/uniprot/core-sat.owl", 
+                                PagodaTester.onto_dir + "bio2rdf/uniprot/graph sampling/sample_1.nt", 
+                                PagodaTester.onto_dir + "bio2rdf/uniprot/queries/atomic_ground.sparql"
+                                , "hermit_uniprot.out"
+//                              , "/home/yzhou/java-workspace/test-share/results_new/uniprot/hermit_1p"
+                ); 
+        }
+
+}