diff options
Diffstat (limited to 'test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaReactome.java')
| -rw-r--r-- | test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaReactome.java | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaReactome.java b/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaReactome.java new file mode 100644 index 0000000..5c05b94 --- /dev/null +++ b/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaReactome.java | |||
| @@ -0,0 +1,26 @@ | |||
| 1 | package uk.ac.ox.cs.pagoda.global_tests; | ||
| 2 | |||
| 3 | import org.testng.annotations.Test; | ||
| 4 | import uk.ac.ox.cs.pagoda.Pagoda; | ||
| 5 | import uk.ac.ox.cs.pagoda.util.TestUtil; | ||
| 6 | |||
| 7 | import java.io.IOException; | ||
| 8 | import java.nio.file.Paths; | ||
| 9 | |||
| 10 | public class TestPagodaReactome { | ||
| 11 | |||
| 12 | @Test(groups = {"light"}) | ||
| 13 | public void justExecute() throws IOException { | ||
| 14 | String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); | ||
| 15 | |||
| 16 | Pagoda.builder() | ||
| 17 | .ontology(Paths.get(ontoDir, "reactome/biopax-level3-processed.owl")) | ||
| 18 | .data(Paths.get(ontoDir, "reactome/data/sample_10.ttl")) | ||
| 19 | .query(Paths.get(ontoDir, "reactome/test.sparql")) | ||
| 20 | .classify(true) | ||
| 21 | .hermit(true) | ||
| 22 | .build() | ||
| 23 | .run(); | ||
| 24 | } | ||
| 25 | |||
| 26 | } | ||
