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-rw-r--r--test/uk/ac/ox/cs/pagoda/global_tests/CheckAnswers.java (renamed from test/uk/ac/ox/cs/pagoda/global_tests/CheckAnswersOverDataset.java)23
-rw-r--r--test/uk/ac/ox/cs/pagoda/global_tests/JAIR_PAGOdA.java48
-rw-r--r--test/uk/ac/ox/cs/pagoda/global_tests/JAIR_Scalability.java52
-rw-r--r--test/uk/ac/ox/cs/pagoda/global_tests/LightEvaluation.java5
-rw-r--r--test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaLUBM.java35
-rw-r--r--test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaUOBM.java45
6 files changed, 109 insertions, 99 deletions
diff --git a/test/uk/ac/ox/cs/pagoda/global_tests/CheckAnswersOverDataset.java b/test/uk/ac/ox/cs/pagoda/global_tests/CheckAnswers.java
index 424afa2..14050ce 100644
--- a/test/uk/ac/ox/cs/pagoda/global_tests/CheckAnswersOverDataset.java
+++ b/test/uk/ac/ox/cs/pagoda/global_tests/CheckAnswers.java
@@ -3,37 +3,24 @@ package uk.ac.ox.cs.pagoda.global_tests;
3import com.google.gson.Gson; 3import com.google.gson.Gson;
4import com.google.gson.reflect.TypeToken; 4import com.google.gson.reflect.TypeToken;
5import org.testng.Assert; 5import org.testng.Assert;
6import uk.ac.ox.cs.pagoda.Pagoda;
7import uk.ac.ox.cs.pagoda.query.QueryRecord; 6import uk.ac.ox.cs.pagoda.query.QueryRecord;
8 7
9import java.io.BufferedReader; 8import java.io.BufferedReader;
10import java.io.File;
11import java.io.IOException; 9import java.io.IOException;
12import java.lang.reflect.Type; 10import java.lang.reflect.Type;
13import java.nio.file.Files; 11import java.nio.file.Files;
14import java.nio.file.Path; 12import java.nio.file.Path;
15import java.nio.file.Paths;
16import java.util.Set; 13import java.util.Set;
17 14
18/** 15/**
19 * Given an instance of Pagoda, it checks the returned answers. 16 * It provides auxiliary methods for checking answers.
20 * */ 17 * */
21public class CheckAnswersOverDataset { 18public class CheckAnswers {
22 19
23 public static void check(Pagoda pagoda, Path givenAnswers) { 20 private CheckAnswers() {
24 try {
25// Utility.setLogLevel(Level.DEBUG); // uncomment for outputting partial results
26 Path computedAnswers = Paths.get(File.createTempFile("answers", ".json").getAbsolutePath());
27 new File(computedAnswers.toString()).deleteOnExit();
28
29 pagoda.run();
30 assertSameContent(computedAnswers, givenAnswers);
31 } catch (IOException e) {
32 e.printStackTrace();
33 }
34 } 21 }
35 22
36 private static void assertSameContent(Path computedAnswersFile, Path givenAnswersFile) throws IOException { 23 public static void assertSameAnswers(Path computedAnswersFile, Path givenAnswersFile) throws IOException {
37 BufferedReader computedReader = Files.newBufferedReader(computedAnswersFile); 24 BufferedReader computedReader = Files.newBufferedReader(computedAnswersFile);
38 BufferedReader givenReader = Files.newBufferedReader(givenAnswersFile); 25 BufferedReader givenReader = Files.newBufferedReader(givenAnswersFile);
39 26
diff --git a/test/uk/ac/ox/cs/pagoda/global_tests/JAIR_PAGOdA.java b/test/uk/ac/ox/cs/pagoda/global_tests/JAIR_PAGOdA.java
index 0d77fdb..18f6cf9 100644
--- a/test/uk/ac/ox/cs/pagoda/global_tests/JAIR_PAGOdA.java
+++ b/test/uk/ac/ox/cs/pagoda/global_tests/JAIR_PAGOdA.java
@@ -8,16 +8,24 @@ import java.io.IOException;
8 8
9public class JAIR_PAGOdA { 9public class JAIR_PAGOdA {
10 10
11 public static void main(String... args) {
12 try {
13 new JAIR_PAGOdA().lubm1();
14 } catch(IOException e) {
15 e.printStackTrace();
16 }
17 }
18
11 @Test 19 @Test
12 public void lubm1() throws IOException { 20 public void lubm1() throws IOException {
13 String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); 21 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
14 String[] args = new String[] { 22 String[] args = new String[] {
15 TestUtil.combinePaths(ontoDir, "lubm/univ-bench.owl"), 23 TestUtil.combinePaths(ontoDir, "lubm/univ-bench.owl"),
16 TestUtil.combinePaths(ontoDir, "lubm/data/lubm1.ttl"), 24 TestUtil.combinePaths(ontoDir, "lubm/data/lubm1.ttl"),
17 TestUtil.combinePaths(ontoDir, "lubm/queries/test.sparql") 25 TestUtil.combinePaths(ontoDir, "lubm/queries/answersCorrectness.sparql")
18 }; 26 };
19 PagodaTester.main(args); 27 PagodaTester.main(args);
20 TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/lubm1/pagoda"); 28 TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/lubm1/pagoda");
21 } 29 }
22 30
23 @Test 31 @Test
@@ -29,7 +37,7 @@ public class JAIR_PAGOdA {
29 TestUtil.combinePaths(ontoDir, "lubm/queries/test_pellet.sparql") 37 TestUtil.combinePaths(ontoDir, "lubm/queries/test_pellet.sparql")
30 }; 38 };
31 PagodaTester.main(args); 39 PagodaTester.main(args);
32 TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/lubm1/pagoda_conj"); 40 TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/lubm1/pagoda_conj");
33 } 41 }
34 42
35 @Test 43 @Test
@@ -40,7 +48,7 @@ public class JAIR_PAGOdA {
40 TestUtil.combinePaths(ontoDir, "lubm/data/lubm1.ttl"), 48 TestUtil.combinePaths(ontoDir, "lubm/data/lubm1.ttl"),
41 TestUtil.combinePaths(ontoDir, "lubm/queries/atomic_lubm.sparql") 49 TestUtil.combinePaths(ontoDir, "lubm/queries/atomic_lubm.sparql")
42 ); 50 );
43 TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/lubm1/pagoda_rolledUp"); 51 TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/lubm1/pagoda_rolledUp");
44 } 52 }
45 53
46 @Test 54 @Test
@@ -52,7 +60,7 @@ public class JAIR_PAGOdA {
52 TestUtil.combinePaths(ontoDir, "uobm/queries/standard.sparql") 60 TestUtil.combinePaths(ontoDir, "uobm/queries/standard.sparql")
53 }; 61 };
54 PagodaTester.main(args); 62 PagodaTester.main(args);
55 TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uobm1/pagoda"); 63 TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/uobm1/pagoda");
56 } 64 }
57 65
58 @Test 66 @Test
@@ -64,7 +72,7 @@ public class JAIR_PAGOdA {
64 TestUtil.combinePaths(ontoDir, "uobm/queries/standard_pellet.sparql") 72 TestUtil.combinePaths(ontoDir, "uobm/queries/standard_pellet.sparql")
65 }; 73 };
66 PagodaTester.main(args); 74 PagodaTester.main(args);
67 TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uobm1/pagoda_conj"); 75 TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/uobm1/pagoda_conj");
68 } 76 }
69 77
70 @Test 78 @Test
@@ -76,7 +84,7 @@ public class JAIR_PAGOdA {
76 TestUtil.combinePaths(ontoDir, "uobm/queries/atomic_uobm.sparql") 84 TestUtil.combinePaths(ontoDir, "uobm/queries/atomic_uobm.sparql")
77 }; 85 };
78 PagodaTester.main(args); 86 PagodaTester.main(args);
79// TestUtil.copyFile(("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uobm1/pagoda_rolledUp"); 87// TestUtil.copyFile(("output/log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/uobm1/pagoda_rolledUp");
80 } 88 }
81 89
82 @Test 90 @Test
@@ -88,7 +96,7 @@ public class JAIR_PAGOdA {
88 TestUtil.combinePaths(ontoDir, "fly/queries/fly_pellet.sparql") 96 TestUtil.combinePaths(ontoDir, "fly/queries/fly_pellet.sparql")
89 }; 97 };
90 PagodaTester.main(args); 98 PagodaTester.main(args);
91// TestUtil.copyFile(("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/fly/pagoda"); 99// TestUtil.copyFile(("output/log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/fly/pagoda");
92 } 100 }
93 101
94 @Test 102 @Test
@@ -100,10 +108,9 @@ public class JAIR_PAGOdA {
100 TestUtil.combinePaths(ontoDir, "fly/queries/fly_pellet.sparql") 108 TestUtil.combinePaths(ontoDir, "fly/queries/fly_pellet.sparql")
101 }; 109 };
102 PagodaTester.main(args); 110 PagodaTester.main(args);
103 TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/fly/pagoda_conj"); 111 TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/fly/pagoda_conj");
104 } 112 }
105 113
106
107 public void fly_rolledUp() { 114 public void fly_rolledUp() {
108 String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); 115 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
109 PagodaTester.main( 116 PagodaTester.main(
@@ -112,7 +119,7 @@ public class JAIR_PAGOdA {
112 null, 119 null,
113 TestUtil.combinePaths(ontoDir, "fly/queries/fly_atomic.sparql") 120 TestUtil.combinePaths(ontoDir, "fly/queries/fly_atomic.sparql")
114 ); 121 );
115// TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/fly/pagoda_rolledUp"); 122// TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/fly/pagoda_rolledUp");
116 } 123 }
117 124
118 public void dbpedia() { 125 public void dbpedia() {
@@ -124,7 +131,7 @@ public class JAIR_PAGOdA {
124 "dbpedia.ans" 131 "dbpedia.ans"
125 ); 132 );
126 133
127// TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/dbpedia/pagoda"); 134// TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/dbpedia/pagoda");
128 } 135 }
129 136
130 public void npd() { 137 public void npd() {
@@ -136,7 +143,7 @@ public class JAIR_PAGOdA {
136 , "npd.ans" 143 , "npd.ans"
137 ); 144 );
138 145
139// TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/npd/pagoda"); 146// TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/npd/pagoda");
140 } 147 }
141 148
142 public void reactome() throws IOException { 149 public void reactome() throws IOException {
@@ -151,7 +158,7 @@ public class JAIR_PAGOdA {
151 ); 158 );
152 TestUtil.copyFile("log4j.log", "output/jair/pagoda_reactome.example"); 159 TestUtil.copyFile("log4j.log", "output/jair/pagoda_reactome.example");
153 160
154// TestUtil.copyFile(("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/reactome/pagoda_10p"); 161// TestUtil.copyFile(("output/log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/reactome/pagoda_10p");
155 } 162 }
156 163
157 public void chembl() throws IOException { 164 public void chembl() throws IOException {
@@ -164,7 +171,7 @@ public class JAIR_PAGOdA {
164 , "pagoda_chembl.ans" 171 , "pagoda_chembl.ans"
165 ); 172 );
166 TestUtil.copyFile("log4j.log", "output/jair/pagoda_chembl.example"); 173 TestUtil.copyFile("log4j.log", "output/jair/pagoda_chembl.example");
167// TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/chembl/pagoda_1p"); 174// TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/chembl/pagoda_1p");
168 } 175 }
169 176
170 public void uniprot() throws IOException { 177 public void uniprot() throws IOException {
@@ -178,16 +185,7 @@ public class JAIR_PAGOdA {
178 , "pagoda_uniprot.ans" 185 , "pagoda_uniprot.ans"
179 ); 186 );
180 TestUtil.copyFile("log4j.log", "output/jair/pagoda_uniprot.example"); 187 TestUtil.copyFile("log4j.log", "output/jair/pagoda_uniprot.example");
181// TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uniprot/pagoda_1p"); 188// TestUtil.copyFile("output/log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/uniprot/pagoda_1p");
182 }
183
184
185 public static void main(String... args) {
186 try {
187 new JAIR_PAGOdA().lubm1();
188 } catch (IOException e) {
189 e.printStackTrace();
190 }
191 } 189 }
192 190
193} 191}
diff --git a/test/uk/ac/ox/cs/pagoda/global_tests/JAIR_Scalability.java b/test/uk/ac/ox/cs/pagoda/global_tests/JAIR_Scalability.java
index 687ffee..5feda35 100644
--- a/test/uk/ac/ox/cs/pagoda/global_tests/JAIR_Scalability.java
+++ b/test/uk/ac/ox/cs/pagoda/global_tests/JAIR_Scalability.java
@@ -9,13 +9,18 @@ import java.io.IOException;
9 9
10public class JAIR_Scalability { 10public class JAIR_Scalability {
11 11
12 private static final String date = "_0123"; 12 private static final String date = "_0123";
13 13
14 public static void main(String... args) throws IOException {
15 Properties.shellModeDefault = true;
16 new JAIR_Scalability().testUniProt(50, false);
17 }
18
14 @Test 19 @Test
15 public void reactome() throws IOException { 20 public void reactome() throws IOException {
16 testReactome(10, false); 21 testReactome(10, false);
17 } 22 }
18 23
19 @Test 24 @Test
20 public void chembl() throws IOException { 25 public void chembl() throws IOException {
21 testChEMBL(1, false); 26 testChEMBL(1, false);
@@ -31,15 +36,15 @@ public class JAIR_Scalability {
31 String[] args = new String[] { 36 String[] args = new String[] {
32 TestUtil.combinePaths(ontoDir, "bio2rdf/reactome/biopax-level3-processed.owl"), 37 TestUtil.combinePaths(ontoDir, "bio2rdf/reactome/biopax-level3-processed.owl"),
33 TestUtil.combinePaths(ontoDir, "bio2rdf/reactome/graph sampling/simplifed_sample_" + percentage + ".ttl"), 38 TestUtil.combinePaths(ontoDir, "bio2rdf/reactome/graph sampling/simplifed_sample_" + percentage + ".ttl"),
34 TestUtil.combinePaths(ontoDir, "bio2rdf/reactome/queries/test.sparql") 39 TestUtil.combinePaths(ontoDir, "bio2rdf/reactome/queries/answersCorrectness.sparql")
35 , "reactome.ans" 40 , "reactome.ans"
36 }; 41 };
37 if (percentage == 10) 42 if (percentage == 10)
38 args[1] = args[1].replace("simplifed", "reactome"); 43 args[1] = args[1].replace("simplifed", "reactome");
39 44
40 PagodaTester.main(args); 45 PagodaTester.main(args);
41 if (save) 46 if (save)
42 TestUtil.copyFile("log4j.log", "/home/yzhou/java-workspace/test-share/results_new/reactome/pagoda_" + percentage + "p" + date); 47 TestUtil.copyFile("log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/reactome/pagoda_" + percentage + "p" + date);
43 } 48 }
44 49
45 public void testChEMBL(int percentage, boolean save) throws IOException { 50 public void testChEMBL(int percentage, boolean save) throws IOException {
@@ -48,18 +53,18 @@ public class JAIR_Scalability {
48 TestUtil.combinePaths(ontoDir, "bio2rdf/chembl/cco-noDPR.ttl"), 53 TestUtil.combinePaths(ontoDir, "bio2rdf/chembl/cco-noDPR.ttl"),
49 TestUtil.combinePaths(ontoDir, "bio2rdf/chembl/sample_" + percentage + ".nt"), 54 TestUtil.combinePaths(ontoDir, "bio2rdf/chembl/sample_" + percentage + ".nt"),
50// TestUtil.combinePaths(ontoDir, "bio2rdf/chembl/queries/atomic_ground.sparql") 55// TestUtil.combinePaths(ontoDir, "bio2rdf/chembl/queries/atomic_ground.sparql")
51 TestUtil.combinePaths(ontoDir, "bio2rdf/chembl/queries/test.sparql") 56 TestUtil.combinePaths(ontoDir, "bio2rdf/chembl/queries/answersCorrectness.sparql")
52 , "chembl.ans" 57 , "chembl.ans"
53 }; 58 };
54 if (percentage == 1 || percentage == 10 || percentage == 50) 59 if (percentage == 1 || percentage == 10 || percentage == 50)
55 args[1] = args[1].replace("chembl", "chembl/graph sampling"); 60 args[1] = args[1].replace("chembl", "chembl/graph sampling");
56 else 61 else
57 if (percentage == 100) 62 if (percentage == 100)
58 args[1] = "/home/yzhou/RDFData/ChEMBL/facts/ChEMBL.ttl"; 63 args[1] = "/home/yzhou/RDFData/ChEMBL/facts/ChEMBL.ttl";
59 64
60 PagodaTester.main(args); 65 PagodaTester.main(args);
61 if (save) 66 if (save)
62 TestUtil.copyFile("log4j.log", "/home/yzhou/java-workspace/test-share/results_new/chembl/pagoda_" + percentage + "p" + date); 67 TestUtil.copyFile("log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/chembl/pagoda_" + percentage + "p" + date);
63 } 68 }
64 69
65 public void testUniProt(int percentage, boolean save) throws IOException { 70 public void testUniProt(int percentage, boolean save) throws IOException {
@@ -68,24 +73,19 @@ public class JAIR_Scalability {
68 TestUtil.combinePaths(ontoDir, "bio2rdf/uniprot/core-sat-processed.owl"), 73 TestUtil.combinePaths(ontoDir, "bio2rdf/uniprot/core-sat-processed.owl"),
69 TestUtil.combinePaths(ontoDir, "bio2rdf/uniprot/sample_" + percentage + ".nt"), 74 TestUtil.combinePaths(ontoDir, "bio2rdf/uniprot/sample_" + percentage + ".nt"),
70// TestUtil.combinePaths(ontoDir, "bio2rdf/uniprot/queries/atomic_ground.sparql") 75// TestUtil.combinePaths(ontoDir, "bio2rdf/uniprot/queries/atomic_ground.sparql")
71 TestUtil.combinePaths(ontoDir, "bio2rdf/uniprot/queries/test.sparql") 76 TestUtil.combinePaths(ontoDir, "bio2rdf/uniprot/queries/answersCorrectness.sparql")
72 , "uniprot.ans" 77 , "uniprot.ans"
73 }; 78 };
74 79
75 if (percentage == 1 || percentage == 10 || percentage == 50) 80 if (percentage == 1 || percentage == 10 || percentage == 50)
76 args[1] = args[1].replace("uniprot", "uniprot/graph sampling"); 81 args[1] = args[1].replace("uniprot", "uniprot/graph sampling");
77 else 82 else
78 if (percentage == 100) 83 if (percentage == 100)
79 args[1] = "/home/yzhou/krr-nas-share/Yujiao/ontologies/bio2rdf/uniprot/data/uniprot_cleaned.nt"; 84 args[1] = "/home/yzhou/krr-nas-share/Yujiao/ontologies/bio2rdf/uniprot/data/uniprot_cleaned.nt";
80 85
81 PagodaTester.main(args); 86 PagodaTester.main(args);
82 if (save) 87 if (save)
83 TestUtil.copyFile("log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uniprot/pagoda_" + percentage + "p" + date); 88 TestUtil.copyFile("log4j.log", "/home/yzhou/java-workspace/answersCorrectness-share/results_new/uniprot/pagoda_" + percentage + "p" + date);
84 }
85
86 public static void main(String... args) throws IOException {
87 Properties.shellModeDefault = true;
88 new JAIR_Scalability().testUniProt(50, false);
89 } 89 }
90 90
91} 91}
diff --git a/test/uk/ac/ox/cs/pagoda/global_tests/LightEvaluation.java b/test/uk/ac/ox/cs/pagoda/global_tests/LightEvaluation.java
index b073a26..7fc5da8 100644
--- a/test/uk/ac/ox/cs/pagoda/global_tests/LightEvaluation.java
+++ b/test/uk/ac/ox/cs/pagoda/global_tests/LightEvaluation.java
@@ -4,12 +4,13 @@ import org.testng.annotations.Test;
4 4
5import java.io.IOException; 5import java.io.IOException;
6 6
7@Deprecated
7public class LightEvaluation { 8public class LightEvaluation {
8 9
9 @Test 10 @Test
10 public void evaluation() throws IOException { 11 public void evaluation() throws IOException {
11 new TestPagodaUOBM().test(1); 12 new TestPagodaUOBM().answersCorrectness(1);
12 new TestPagodaLUBM().test(100); 13 new TestPagodaLUBM().answersCorrecntess(100);
13 new TestPagodaFLY().test(); 14 new TestPagodaFLY().test();
14 new TestPagodaDBPedia().test(); 15 new TestPagodaDBPedia().test();
15 new TestPagodaNPD().testNPDwithoutDataType(); 16 new TestPagodaNPD().testNPDwithoutDataType();
diff --git a/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaLUBM.java b/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaLUBM.java
index bb58681..8cbe022 100644
--- a/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaLUBM.java
+++ b/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaLUBM.java
@@ -4,42 +4,57 @@ import org.testng.annotations.Test;
4import uk.ac.ox.cs.pagoda.Pagoda; 4import uk.ac.ox.cs.pagoda.Pagoda;
5import uk.ac.ox.cs.pagoda.util.TestUtil; 5import uk.ac.ox.cs.pagoda.util.TestUtil;
6 6
7import java.io.File;
7import java.io.IOException; 8import java.io.IOException;
9import java.nio.file.Path;
8import java.nio.file.Paths; 10import java.nio.file.Paths;
9 11
10public class TestPagodaLUBM { 12public class TestPagodaLUBM {
11 13
12 public void test(int number) throws IOException { 14 /**
15 * Just execute on LUBM 100
16 */
17 public static void main(String... args) {
18 new TestPagodaLUBM().justExecute_100();
19 }
20
21 public void answersCorrecntess(int number) throws IOException {
13 String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); 22 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
23 Path computedAnswers = Paths.get(File.createTempFile("answers", ".json").getAbsolutePath());
24 new File(computedAnswers.toString()).deleteOnExit();
25
14 Pagoda pagoda = Pagoda.builder() 26 Pagoda pagoda = Pagoda.builder()
15 .ontology(Paths.get(ontoDir, "lubm/univ-bench.owl")) 27 .ontology(Paths.get(ontoDir, "lubm/univ-bench.owl"))
16 .data(Paths.get(ontoDir, "lubm/data/lubm" + number + ".ttl")) 28 .data(Paths.get(ontoDir, "lubm/data/lubm" + number + ".ttl"))
17 .query(Paths.get(ontoDir, "lubm/queries/test.sparql")) 29 .query(Paths.get(ontoDir, "lubm/queries/test.sparql"))
30 .answer(computedAnswers)
18 .classify(true) 31 .classify(true)
19 .hermit(true) 32 .hermit(true)
20 .build(); 33 .build();
21 CheckAnswersOverDataset.check(pagoda, Paths.get(ontoDir, "lubm/lubm" + number + ".json")); 34 pagoda.run();
35
36 Path givenAnswers = Paths.get(ontoDir, "lubm/lubm" + number + ".json");
37 CheckAnswers.assertSameAnswers(computedAnswers, givenAnswers);
22 } 38 }
23 39
24 @Test 40 @Test(groups = {"light"})
25 public void test_1() throws IOException { 41 public void answersCorrectness_1() throws IOException {
26 test(1); 42 answersCorrecntess(1);
27 } 43 }
28 44
45 /**
46 * Just execute on LUBM 100
47 * */
29 public void justExecute_100() { 48 public void justExecute_100() {
30 int number = 100; 49 int number = 100;
31 String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); 50 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
32 Pagoda pagoda = Pagoda.builder() 51 Pagoda pagoda = Pagoda.builder()
33 .ontology(Paths.get(ontoDir, "lubm/univ-bench.owl")) 52 .ontology(Paths.get(ontoDir, "lubm/univ-bench.owl"))
34 .data(Paths.get(ontoDir, "lubm/data/lubm" + number + ".ttl")) 53 .data(Paths.get(ontoDir, "lubm/data/lubm" + number + ".ttl"))
35 .query(Paths.get(ontoDir, "lubm/queries/test.sparql")) 54 .query(Paths.get(ontoDir, "lubm/queries/answersCorrectness.sparql"))
36 .classify(true) 55 .classify(true)
37 .hermit(true) 56 .hermit(true)
38 .build(); 57 .build();
39 pagoda.run(); 58 pagoda.run();
40 } 59 }
41
42 public static void main(String... args) {
43 new TestPagodaLUBM().justExecute_100();
44 }
45} 60}
diff --git a/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaUOBM.java b/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaUOBM.java
index 61235d3..23d79ab 100644
--- a/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaUOBM.java
+++ b/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaUOBM.java
@@ -6,48 +6,57 @@ import uk.ac.ox.cs.pagoda.Pagoda;
6import uk.ac.ox.cs.pagoda.tester.PagodaTester; 6import uk.ac.ox.cs.pagoda.tester.PagodaTester;
7import uk.ac.ox.cs.pagoda.util.TestUtil; 7import uk.ac.ox.cs.pagoda.util.TestUtil;
8 8
9import java.io.File;
9import java.io.IOException; 10import java.io.IOException;
11import java.nio.file.Path;
10import java.nio.file.Paths; 12import java.nio.file.Paths;
11 13
12import static uk.ac.ox.cs.pagoda.util.TestUtil.combinePaths; 14import static uk.ac.ox.cs.pagoda.util.TestUtil.combinePaths;
13 15
14public class TestPagodaUOBM { 16public class TestPagodaUOBM {
15 17
16 public void test(int number) throws IOException { 18
19 private static final int N_1 = 1;
20 private static final int N_2 = 10;
21
22 @DataProvider(name = "uobmNumbers")
23 public static Object[][] uobmNumbers() {
24 Integer[][] integers = new Integer[N_2 - N_1 + 1][1];
25 for(int i = 0; i < N_2 - N_1 + 1; i++)
26 integers[i][0] = N_1 + i;
27 return integers;
28 }
29
30 public void answersCorrectness(int number) throws IOException {
17 String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); 31 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
32 Path computedAnswers = Paths.get(File.createTempFile("answers", ".json").getAbsolutePath());
33 new File(computedAnswers.toString()).deleteOnExit();
34
18 Pagoda pagoda = Pagoda.builder() 35 Pagoda pagoda = Pagoda.builder()
19 .ontology(Paths.get(ontoDir, "uobm/univ-bench-dl.owl")) 36 .ontology(Paths.get(ontoDir, "uobm/univ-bench-dl.owl"))
20 .data(Paths.get(ontoDir, "uobm/data/uobm" + number + ".ttl")) 37 .data(Paths.get(ontoDir, "uobm/data/uobm" + number + ".ttl"))
21 .query(Paths.get(ontoDir, "uobm/queries/test.sparql")) 38 .query(Paths.get(ontoDir, "uobm/queries/test.sparql"))
39 .answer(computedAnswers)
22 .classify(true) 40 .classify(true)
23 .hermit(true) 41 .hermit(true)
24 .build(); 42 .build();
25 CheckAnswersOverDataset.check(pagoda, 43 pagoda.run();
26 Paths.get(ontoDir, "uobm/uobm" + number + ".json"));
27 }
28 44
29 @Test 45 String given_answers = "uobm/uobm" + number + ".json";
30 public void test_1() throws IOException { 46 CheckAnswers.assertSameAnswers(computedAnswers, Paths.get(ontoDir, given_answers));
31 test(1);
32 } 47 }
33 48
34 private static final int N_1 = 1; 49 @Test(groups = {"light"})
35 private static final int N_2 = 10; 50 public void answersCorrectness_1() throws IOException {
36 51 answersCorrectness(1);
37 @DataProvider(name = "uobmNumbers")
38 public static Object[][] uobmNumbers() {
39 Integer[][] integers = new Integer[N_2 - N_1 + 1][1];
40 for (int i = 0; i < N_2 - N_1 + 1; i++)
41 integers[i][0]= N_1 + i;
42 return integers;
43 } 52 }
44 53
45 @Test(dataProvider = "uobmNumbers") 54 @Test(groups = {"heavy"}, dataProvider = "uobmNumbers")
46 public void justExecute(int number) { 55 public void justExecute(int number) {
47 String ontoDir = TestUtil.getConfig().getProperty("ontoDir"); 56 String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
48 PagodaTester.main(combinePaths(ontoDir, "uobm/univ-bench-dl.owl"), 57 PagodaTester.main(combinePaths(ontoDir, "uobm/univ-bench-dl.owl"),
49 combinePaths(ontoDir, "uobm/data/uobm" + number + ".ttl"), 58 combinePaths(ontoDir, "uobm/data/uobm" + number + ".ttl"),
50 combinePaths(ontoDir, "uobm/queries/test.sparql")); 59 combinePaths(ontoDir, "uobm/queries/answersCorrectness.sparql"));
51 } 60 }
52 61
53} 62}
generated by cgit v1.2.3 (git 2.25.1) at 2025-11-05 12:45:57 +0000