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package uk.ac.ox.cs.pagoda.junit;
import org.junit.Test;
import uk.ac.ox.cs.pagoda.tester.PagodaTester;
public class JAIR_PAGOdA {
public void lubm1() {
String[] args = new String[] {
PagodaTester.onto_dir + "lubm/univ-bench.owl",
PagodaTester.onto_dir + "lubm/data/lubm1.ttl",
PagodaTester.onto_dir + "lubm/queries/test.sparql"
};
PagodaTester.main(args);
AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/lubm1/pagoda");
}
public void lubm1_conj() {
String[] args = new String[] {
PagodaTester.onto_dir + "lubm/univ-bench.owl",
PagodaTester.onto_dir + "lubm/data/lubm1.ttl",
PagodaTester.onto_dir + "lubm/queries/test_pellet.sparql"
};
PagodaTester.main(args);
AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/lubm1/pagoda_conj");
}
public void lubm1_rolledUp() {
String[] args = new String[] {
"/home/yzhou/backup/20141212/univ-bench-queries.owl",
PagodaTester.onto_dir + "lubm/data/lubm1.ttl",
PagodaTester.onto_dir + "lubm/queries/atomic_lubm.sparql"
};
PagodaTester.main(args);
AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/lubm1/pagoda_rolledUp");
}
public void uobm1() {
String[] args = new String[] {
PagodaTester.onto_dir + "uobm/univ-bench-dl.owl",
PagodaTester.onto_dir + "uobm/data/uobm1.ttl",
PagodaTester.onto_dir + "uobm/queries/standard.sparql"
};
PagodaTester.main(args);
AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uobm1/pagoda");
}
public void uobm1_conj() {
String[] args = new String[] {
PagodaTester.onto_dir + "uobm/univ-bench-dl.owl",
PagodaTester.onto_dir + "uobm/data/uobm1.ttl",
PagodaTester.onto_dir + "uobm/queries/standard_pellet.sparql"
};
PagodaTester.main(args);
AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uobm1/pagoda_conj");
}
public void uobm1_rolledUp() {
String[] args = new String[] {
"/home/yzhou/backup/20141212/univ-bench-dl-queries.owl",
PagodaTester.onto_dir + "uobm/data/uobm1.ttl",
PagodaTester.onto_dir + "uobm/queries/atomic_uobm.sparql"
};
PagodaTester.main(args);
// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uobm1/pagoda_rolledUp");
}
public void fly() {
String[] args = new String[] {
PagodaTester.onto_dir + "fly/fly_anatomy_XP_with_GJ_FC_individuals.owl",
null,
PagodaTester.onto_dir + "fly/queries/fly_pellet.sparql"
};
PagodaTester.main(args);
// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/fly/pagoda");
}
@Test
public void fly_conj() {
String[] args = new String[] {
PagodaTester.onto_dir + "fly/fly_anatomy_XP_with_GJ_FC_individuals.owl",
null,
PagodaTester.onto_dir + "fly/queries/fly_pellet.sparql"
};
PagodaTester.main(args);
AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/fly/pagoda_conj");
}
public void fly_rolledUp() {
PagodaTester.main(new String[] {
// PagodaTester.onto_dir + "fly/fly_anatomy_XP_with_GJ_FC_individuals.owl",
PagodaTester.onto_dir + "fly/fly-all-in-one_rolledUp.owl",
null,
PagodaTester.onto_dir + "fly/queries/fly_atomic.sparql"
});
// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/fly/pagoda_rolledUp");
}
public void dbpedia() {
PagodaTester.main(
PagodaTester.onto_dir + "dbpedia/integratedOntology-all-in-one-minus-datatype.owl",
PagodaTester.onto_dir + "dbpedia/data/dbpedia-minus-datatype-new.ttl",
PagodaTester.onto_dir + "dbpedia/queries/atomic_ground.sparql"
, "dbpedia.ans"
);
// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/dbpedia/pagoda");
}
public void npd() {
PagodaTester.main(
PagodaTester.onto_dir + "npd/npd-all-minus-datatype.owl",
PagodaTester.onto_dir + "npd/data/npd-data-dump-minus-datatype-new.ttl",
PagodaTester.onto_dir + "npd/queries/atomic_ground.sparql"
, "npd.ans"
);
// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/npd/pagoda");
}
public void reactome() {
PagodaTester.main(
PagodaTester.onto_dir + "bio2rdf/reactome/biopax-level3-processed.owl",
PagodaTester.onto_dir + "bio2rdf/reactome/graph sampling/reactome_sample_10.ttl",
// null,
// PagodaTester.onto_dir + "bio2rdf/reactome/queries/atomic_ground.sparql"
PagodaTester.onto_dir + "bio2rdf/reactome/queries/example.sparql"
, "pagoda_reactome.ans"
);
AllTests.copy("log4j.log", "output/jair/pagoda_reactome.example");
// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/reactome/pagoda_10p");
}
public void chembl() {
PagodaTester.main(
PagodaTester.onto_dir + "bio2rdf/chembl/cco-noDPR.ttl",
PagodaTester.onto_dir + "bio2rdf/chembl/graph sampling/sample_1.nt",
// PagodaTester.onto_dir + "bio2rdf/chembl/queries/atomic_ground.sparql"
PagodaTester.onto_dir + "bio2rdf/chembl/queries/example.sparql"
, "pagoda_chembl.ans"
);
AllTests.copy("log4j.log", "output/jair/pagoda_chembl.example");
// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/chembl/pagoda_1p");
}
public void uniprot() {
PagodaTester.main(
PagodaTester.onto_dir + "bio2rdf/uniprot/core-sat-processed.owl",
PagodaTester.onto_dir + "bio2rdf/uniprot/graph sampling/sample_1.nt",
// null,
// PagodaTester.onto_dir + "bio2rdf/uniprot/queries/atomic_ground.sparql"
PagodaTester.onto_dir + "bio2rdf/uniprot/queries/example.sparql"
, "pagoda_uniprot.ans"
);
AllTests.copy("log4j.log", "output/jair/pagoda_uniprot.example");
// AllTests.copy("output/log4j.log", "/home/yzhou/java-workspace/test-share/results_new/uniprot/pagoda_1p");
}
public static void main(String... args) {
new JAIR_PAGOdA().fly();
}
}
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