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|
#!/usr/bin/env bash
NC='\033[0m'
RED='\033[0;31m'
GREEN='\033[0;32m'
YELLOW='\033[0;33m'
msg_info() {
echo -e "${GREEN}$1${NC}"
}
msg_warn() {
echo -e "${YELLOW}$1${NC}"
}
msg_error() {
echo -e "${RED}$1${NC}"
}
print_help() {
echo
echo "testRSA - a quick script to run tests all night long"
echo
echo "USAGE:"
echo " testRSA OPTION [...]"
echo
echo "OPTIONs are:"
echo " -o | --ontology <path>:"
echo " path to ontology."
echo " -d | --data <path>:"
echo " path to a folder containing data for the ontology."
echo " -q | --queries <path>:"
echo " path to a folder containing SPARQL query files to be"
echo " executed against the ontology and data."
echo " -j | --jar <path>:"
echo " path to the fat jar to be executed."
echo " -p | --prefix <path>:"
echo " provides a folder to prefix to the output files."
echo " Defaults to './results'."
echo " -h | -? | --help:"
echo " print this help"
echo
}
ONTOLOGY=""
DATA=""
QUERIES=""
JAR=""
PREFIX="./results"
while [[ $# -gt 0 ]]
do
case $1 in
-o|--ontology)
shift
ONTOLOGY="$1"
[ ! -r "$ONTOLOGY" ] && \
msg_error "Unable to read '$ONTOLOGY'" && \
print_help && \
exit 2
;;
-d|--data)
shift
DATA="$1"
[ ! -d "$DATA" ] && \
msg_error "'$DATA' is not a directory" && \
print_help && \
exit 2
;;
-q|--queries)
shift
QUERIES="$1"
[ ! -d "$QUERIES" ] && \
msg_error "'$QUERIES' is not a directory" && \
print_help && \
exit 2
;;
-j|--jar)
shift
JAR="$1"
[ ! -r "$JAR" ] && \
msg_error "Unable to read jar '$JAR'" && \
print_help && \
exit 2
;;
-p|--prefix)
shift
PREFIX="$1"
;;
-h|-?|--help)
print_help
exit 0
;;
*)
msg_error "$OPTION: invalid option"
print_help
exit 1
;;
esac
shift
done
[ -z "$ONTOLOGY" ] && \
msg_error "Use -o | --ontology to provide an ontology file" && \
print_help && \
exit 3
[ -z "$DATA" ] && \
msg_error "Use -d | --data to provide a data folder" && \
print_help && \
exit 3
[ -z "$QUERIES" ] && \
msg_error "Use -q | --queries to provide a query folder" && \
print_help && \
exit 3
[ -z "$JAR" ] && \
msg_error "Use -j | --jar to provide a jar file" && \
print_help && \
exit 3
DATAS=`\ls $DATA/*`
mkdir -p "$PREFIX"
for QUERY in "$QUERIES"/query*.sparql
do
#sbt "run $QUERY $ONTOLOGY $DATAS" 2>&1 | tee "$PREFIX/answers_$(basename $QUERY .sparql).txt"
java -cp ./lib/JRDFox.jar:"$JAR" uk.ac.ox.cs.rsacomb.RSAComb -q "$QUERY" "$ONTOLOGY" "$DATA"/* 2>&1 | tee "$PREFIX/answers_$(basename $QUERY .sparql).txt"
done
OUTPUT="$PREFIX/results.csv"
echo "NAME, TBOX, RBOX, ABOX, \
CANONICAL MODEL GENERATION, \
CANONICAL MODEL RULES, CANONICAL MODEL RULES LOADING, \
CANONICAL MODEL FACTS, CANONICAL MODEL FACTS LOADING, \
CANONICAL MODEL IDB, CANONICAL MODEL EDB, \
FILTERING PROGRAM GENERATION, \
FILTERING PROGRAM RULES, FILTERING PROGRAM RULES LOADING, \
FILTERING PROGRAM FACTS, FILTERING PROGRAM FACTS LOADING, \
FILTERING PROGRAM IDB, FILTERING PROGRAM EDB, \
ANSWERING TIME, #ANSWERS, #UNFILTERED, #SPURIOUS, %SPURIOUS" > "$OUTPUT"
for RESULT in "$PREFIX"/*.txt
do
awk -v filename="$RESULT" '
BEGIN {
OFS = ", "
name = filename
sub("^.*answers_", "", name)
sub(".txt$", "", name)
}
/Original TBox/ { tbox_size = $NF }
/Original RBox/ { rbox_size = $NF }
/Original ABox/ { abox_size = $NF }
/Generating canonical model program \(END\)/ { canon_gen_time = $NF }
/Generating filtering program \(END\)/ { filter_gen_time = $NF }
/Canonical model rules/ {
canon_rules = $NF
canon = 1
}
/Canonical model facts/ {
canon_facts = $NF
canon = 1
}
/Filtering program rules/ {
filter_rules = $NF
}
/Filtering program facts/ {
filter_facts = $NF
}
/Loading rules \(END\)/ {
if (canon) {
canon_rules_load = $NF
} else {
filter_rules_load = $NF
}
}
/Loading facts/ {
if (canon) {
canon_facts_load = $NF
} else {
filter_facts_load = $NF
}
}
/Aggregate number of IDB facts/ {
sub("^.*=", "")
sub(",$", "")
if (canon) {
canon_idb = $0
} else {
filter_idb = $0
}
}
/Aggregate number of EDB facts/ {
sub("^.*=", "")
sub(",$", "")
if (canon) {
canon_edb = $0
canon = 0
} else {
filter_edb = $0
}
}
/Answers computation \(END\)/ { answers_time = $NF }
/Number of answers/ { answers = $(NF-1) }
/Number of unfiltered answers/ { unfiltered = $(NF-1) }
/Number of spurious answers/ { spurious = $(NF-1) }
/Percentage of spurious answers/ { spurious_perc = $NF }
END { print name, tbox_size, rbox_size, abox_size, \
canon_gen_time, canon_rules, canon_rules_load, canon_facts, canon_facts_load, \
canon_idb, canon_edb, \
filter_gen_time, filter_rules, filter_rules_load, filter_facts, filter_facts_load, \
filter_idb, filter_edb, \
answers_time, answers, unfiltered, spurious, spurious_perc
}
' "$RESULT" >> "$OUTPUT"
done
exit 0
|
