[pagoda] Move project to Scala

This commit includes a few changes:
- The repository still uses Maven to manage dependency but it is now a
  Scala project.
- The code has been ported from OWLAPI 3.4.10 to 5.1.20
- A proof of concept program using both RSAComb and PAGOdA has been
  added.

2 files changed, 0 insertions, 121 deletions

diff --git a/src/org/semanticweb/simpleETL/RDFHandlerWriter.java b/src/org/semanticweb/simpleETL/RDFHandlerWriter.java
deleted file mode 100644
index e5e2e2a..0000000
--- a/src/org/semanticweb/simpleETL/RDFHandlerWriter.java
+++ /dev/null
@@ -1,45 +0,0 @@
-package org.semanticweb.simpleETL;
-import org.openrdf.model.Statement;
-import org.openrdf.rio.RDFHandler;
-import org.openrdf.rio.RDFHandlerException;
-import org.openrdf.rio.RDFWriter;
-
-
-public class RDFHandlerWriter implements RDFHandler {
-        protected RDFWriter m_writer;
-        protected boolean m_started;
-        
-        public RDFHandlerWriter(RDFWriter writer){
-                m_writer = writer;
-                m_started = false;
-        }
-
-        @Override
-        public void endRDF() throws RDFHandlerException {
-                // Do not end
-        }
-
-        @Override
-        public void handleComment(String arg0) throws RDFHandlerException {
-                m_writer.handleComment(arg0);
-                
-        }
-
-        @Override
-        public void handleNamespace(String arg0, String arg1) throws RDFHandlerException {
-                m_writer.handleNamespace(arg0, arg1);           
-        }
-
-        @Override
-        public void handleStatement(Statement arg0) throws RDFHandlerException {
-                m_writer.handleStatement(arg0);         
-        }
-
-        @Override
-        public void startRDF() throws RDFHandlerException {
-                if(!m_started) {
-                        m_started = true;
-                        m_writer.startRDF();
-                }               
-        }       
-}
diff --git a/src/org/semanticweb/simpleETL/SimpleETL.java b/src/org/semanticweb/simpleETL/SimpleETL.java
deleted file mode 100644
index cc91e1f..0000000
--- a/src/org/semanticweb/simpleETL/SimpleETL.java
+++ /dev/null
@@ -1,76 +0,0 @@
-package org.semanticweb.simpleETL;
-
-import org.openrdf.rio.RDFParser;
-import org.openrdf.rio.RDFWriter;
-import org.openrdf.rio.rdfxml.RDFXMLParser;
-import org.openrdf.rio.turtle.TurtleWriter;
-import uk.ac.ox.cs.pagoda.util.Utility;
-
-import java.io.File;
-import java.io.FileInputStream;
-import java.io.FileOutputStream;
-import java.util.regex.Pattern;
-
-public class SimpleETL {
-        
-        protected final static String m_prefix_LUBM = "http://www.lehigh.edu/~zhp2/2004/0401/univ-bench.owl#";
-        protected final static String m_prefix_UOBM = "http://semantics.crl.ibm.com/univ-bench-dl.owl#";
-        protected final static String m_prefix_FLY= "http://www.virtualflybrain.org/ontologies/individual_neurons/FC_neuron_GF_an.owl#";
-
-        String m_prefix; 
-        String m_fileToImport;
-        String m_fileToExport; 
-        
-        public SimpleETL(String prefix, String fileToImport) {
-                m_prefix = prefix; 
-                m_fileToImport = fileToImport; 
-                m_fileToExport = m_fileToImport.replace(".owl", ".ttl"); 
-        }
-        
-        public SimpleETL(String prefix, String fileToImport, String outPath) {
-                m_prefix = prefix; 
-                m_fileToImport = fileToImport;
-                File file = new File(outPath); 
-                if (file.exists() && file.isDirectory())
-                        m_fileToExport = outPath + Utility.FILE_SEPARATOR + "data.ttl"; 
-                else 
-                        m_fileToExport = outPath; 
-//                              + Utility.FILE_SEPARATOR + m_fileToImport.substring(m_fileToImport.lastIndexOf(Utility.FILE_SEPARATOR), m_fileToImport.lastIndexOf(".")) + ".ttl"; 
-        }
-        
-        public void rewrite() throws Exception {
-//              RDFParser parser = new TurtleParser();
-                RDFParser parser = new RDFXMLParser(); 
-                
-                FileOutputStream fos = new FileOutputStream(m_fileToExport); 
-                try {
-                        RDFWriter writer = new TurtleWriter(fos);
-                
-//                      String m_fileToExport = m_fileToImport.replace(".owl", ".ntriple"); 
-//                      RDFWriter writer = new NTriplesWriter(new FileOutputStream(m_fileToExport));
-                
-                        RDFHandlerWriter multiHandler = new RDFHandlerWriter(writer);
-                        parser.setRDFHandler(multiHandler);
-                        File fileToImport = new File(m_fileToImport);
-                        if(fileToImport.isDirectory()) {
-                                for(File file : fileToImport.listFiles()) {
-                                        if(file.isFile() && (Pattern.matches(".*.owl", file.getName()) || Pattern.matches(".*.rdf", file.getName()))) {
-                                                Utility.logDebug("Parsing " + file.getName());
-                                                parser.parse(new FileInputStream(file), m_prefix);
-                                        }
-                                }
-                        }
-                        else
-                                parser.parse(new FileInputStream(fileToImport), m_prefix);
-                        writer.endRDF();
-                }
-                finally {
-                        fos.close();
-                }
-                Utility.logDebug("SimpleETL rewriting DONE: additional ontology data is saved in " + m_fileToExport + ".");
-        }
-        
-        public String getExportedFile() {
-                return m_fileToExport; 
-        }
-}