Summarisation before Skolemisation. Added Reactome testcase.

3 files changed, 29 insertions, 2 deletions

diff --git a/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaFLY.java b/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaFLY.java
index caaad35..31d2eac 100644
--- a/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaFLY.java
+++ b/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaFLY.java
@@ -52,7 +52,7 @@ public class TestPagodaFLY {
         CheckAnswers.assertSameAnswers(answers, givenAnswers);
     }
 
-    @Test(groups = {"light", "justExecute"})
+    @Test(groups = {"light", "justExecute", "nonOriginal"})
     public void justExecute_newQueries() throws IOException {
         String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
 
diff --git a/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaReactome.java b/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaReactome.java
new file mode 100644
index 0000000..5c05b94
--- /dev/null
+++ b/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaReactome.java
@@ -0,0 +1,26 @@
+package uk.ac.ox.cs.pagoda.global_tests;
+
+import org.testng.annotations.Test;
+import uk.ac.ox.cs.pagoda.Pagoda;
+import uk.ac.ox.cs.pagoda.util.TestUtil;
+
+import java.io.IOException;
+import java.nio.file.Paths;
+
+public class TestPagodaReactome {
+
+    @Test(groups = {"light"})
+    public void justExecute() throws IOException {
+        String ontoDir = TestUtil.getConfig().getProperty("ontoDir");
+
+        Pagoda.builder()
+              .ontology(Paths.get(ontoDir, "reactome/biopax-level3-processed.owl"))
+              .data(Paths.get(ontoDir, "reactome/data/sample_10.ttl"))
+              .query(Paths.get(ontoDir, "reactome/test.sparql"))
+              .classify(true)
+              .hermit(true)
+              .build()
+              .run();
+    }
+
+}
diff --git a/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaUOBM.java b/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaUOBM.java
index d0f0b9a..9fb6cbe 100644
--- a/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaUOBM.java
+++ b/test/uk/ac/ox/cs/pagoda/global_tests/TestPagodaUOBM.java
@@ -87,7 +87,8 @@ public class TestPagodaUOBM {
                           .query(Paths.get(ontoDir, "uobm/queries/uobm_sygenia_all-blanks.sparql"))
                           .classify(true)
                           .hermit(true)
-                          .build().run();
+                          .build()
+                          .run();
         }
 
         @Test(groups = {"justExecute"})